View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4410_low_23 (Length: 257)

Name: NF4410_low_23
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4410_low_23
NF4410_low_23
[»] chr4 (3 HSPs)
chr4 (101-243)||(43487489-43487631)
chr4 (1-57)||(43487433-43487489)
chr4 (135-199)||(44796971-44797035)
[»] chr7 (1 HSPs)
chr7 (113-173)||(21139028-21139089)
[»] chr2 (1 HSPs)
chr2 (142-198)||(36281678-36281734)
[»] chr5 (1 HSPs)
chr5 (133-200)||(12264837-12264904)
[»] chr3 (2 HSPs)
chr3 (141-200)||(32804548-32804607)
chr3 (147-191)||(4201394-4201438)
[»] scaffold0018 (1 HSPs)
scaffold0018 (135-200)||(192257-192322)
[»] scaffold0004 (1 HSPs)
scaffold0004 (135-200)||(92793-92858)
[»] chr6 (3 HSPs)
chr6 (150-191)||(25038088-25038129)
chr6 (147-191)||(31579242-31579286)
chr6 (135-191)||(34073364-34073420)
[»] chr1 (1 HSPs)
chr1 (135-191)||(25452165-25452221)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 43487489 - 43487631
Alignment:
Q  101 tgcactcttatatatgacgcacggatacagaaacgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 200  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  43487489 tgcactcttatctatgacgtacggatacagaaacgacacaggcatgccaacaccgctaataaattgtgaaaatttcataattaagtgtaatcacatgtgt 43487588  T
Q  201 gagtgatttcaagacacacctaatttaaggaatgttcgtgctt 243  Q
    ||||||||||| |||||||||  ||||||||||||||||||||    
T  43487589 gagtgatttcaggacacaccttttttaaggaatgttcgtgctt 43487631  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43487433 - 43487489
Alignment:
Q  1 ttacttccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487433 ttacttccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt 43487489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 44797035 - 44796971
Alignment:
Q  135 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtg 199  Q
    |||||||||||| ||||||||  ||||| ||||||||||  ||||||| | |||||| |||||||    
T  44797035 gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacatgtg 44796971  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 21139089 - 21139028
Alignment:
Q  113 tatgacgcacggatacagaaac-gacacagacatgccaacaccgttaataaattgagaaaat 173  Q
    ||||| ||||||||||||| || ||||| |||||| ||||||||||||||| ||||||||||    
T  21139089 tatgaagcacggatacagacacagacactgacatgtcaacaccgttaataatttgagaaaat 21139028  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 36281678 - 36281734
Alignment:
Q  142 acatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgt 198  Q
    ||||||||| ||||||||||| ||||||||||  ||||||| |||||||||| ||||    
T  36281678 acatgccaataccgttaataatttgagaaaatcacataatttagtgtaatcatatgt 36281734  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 12264904 - 12264837
Alignment:
Q  133 acgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 200  Q
    ||||||| ||||||||||||||| |||| | ||||||||||| ||| ||| |||||||| | ||||||    
T  12264904 acgacactgacatgccaacaccgctaattatttgagaaaattacatgattcagtgtaattatatgtgt 12264837  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 32804607 - 32804548
Alignment:
Q  141 gacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 200  Q
    |||||||| ||||||||||||| ||||||||||  ||||||| |||||||| | ||||||    
T  32804607 gacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgt 32804548  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 4201394 - 4201438
Alignment:
Q  147 ccaacaccgttaataaattgagaaaattgcataattaagtgtaat 191  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||    
T  4201394 ccaacaccgttaataatttgaaaaaatcacataattaagtgtaat 4201438  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 192322 - 192257
Alignment:
Q  135 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 200  Q
    ||||| |||| ||| ||||||||||||| ||||||||||| |||||||  ||||||| ||| ||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattacaagtgt 192257  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 92793 - 92858
Alignment:
Q  135 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 200  Q
    ||||| |||| ||| |||||| |||||| ||||||||||| ||||||| |||||||| ||| ||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgt 92858  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 25038129 - 25038088
Alignment:
Q  150 acaccgttaataaattgagaaaattgcataattaagtgtaat 191  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||    
T  25038129 acaccgttaataatttgagaaaattacataatttagtgtaat 25038088  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 31579286 - 31579242
Alignment:
Q  147 ccaacaccgttaataaattgagaaaattgcataattaagtgtaat 191  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||    
T  31579286 ccaacaccgttaataatttgagaaaatcacataattcagtgtaat 31579242  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 34073420 - 34073364
Alignment:
Q  135 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat 191  Q
    ||||| |||||||||||| || |||||| ||||||||||  ||||||| ||||||||    
T  34073420 gacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaat 34073364  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 25452221 - 25452165
Alignment:
Q  135 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat 191  Q
    ||||| ||||||||||||| | |||||| ||||||||||  ||||||| ||||||||    
T  25452221 gacaccgacatgccaacactgctaataatttgagaaaatctcataattcagtgtaat 25452165  T

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