View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4410_low_34 (Length: 239)
Name: NF4410_low_34
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43487431 - 43487211
Alignment:
| Q |
1 |
ttcaagcgcttcaattttcgtgtagatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43487431 |
ttcaagcgcttcaattttcgtgtggatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctg |
43487332 |
T |
|
| Q |
101 |
atacaaatttcagtctgaaatatgttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43487331 |
atacaaatttcagtctgaaatatgttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaat |
43487232 |
T |
|
| Q |
201 |
gttgagaattgaagtatatgg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43487231 |
gttgagaattgaagtatatgg |
43487211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43465671 - 43465451
Alignment:
| Q |
1 |
ttcaagcgcttcaattttcgtgtagatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctg |
100 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||| |||| ||||| |||||||| |||||||||||||||||||||| ||||||||||| || | |
|
|
| T |
43465671 |
ttcaagcgctttaatgttcgtgtggatgagaataatgtaatgaatcttgacatggttgagttgagggctaagatacggtctaatttcaattttaatgcgg |
43465572 |
T |
|
| Q |
101 |
atacaaatttcagtctgaaatatgttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||| ||||||||||||| ||| |||||||| | ||| || |
|
|
| T |
43465571 |
atgcaaatttcagtctgaaatatgttgatgaagatggcgacttggtgaatcttgtggatgataatgatttgcatgacgtgatgaggcagcagttaaaatc |
43465472 |
T |
|
| Q |
201 |
gttgagaattgaagtatatgg |
221 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
43465471 |
cttgagaattgaagtacatgg |
43465451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43459973 - 43459758
Alignment:
| Q |
1 |
ttcaagcgcttcaattttcgtgtagatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctg |
100 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||| ||| |||||||| | | |
|
|
| T |
43459973 |
ttcaagcgcttcaatgttagtgtggatgagaataatcgaatggatcttaagatggttgagctgagggctaagatacggtctgattttaattttactgata |
43459874 |
T |
|
| Q |
101 |
atacaaatttcagtctgaaatatgttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaat |
200 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| || |||||||| ||||| || |
|
|
| T |
43459873 |
atgcaaatttcagtttgagatatgttgatgaagagggcgacttggtgaatcttgtagatgatgatgatttgcatgacatgatgaggcagcaattaaaata |
43459774 |
T |
|
| Q |
201 |
gttgagaattgaagta |
216 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43459773 |
cttgagaattgaagta |
43459758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 43479089 - 43478890
Alignment:
| Q |
17 |
ttcgtgtagatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctgatacaaatttcagtct |
116 |
Q |
| |
|
||||||| |||||||||||||||| | || ||| |||||||| ||||||||||||||||||||| ||||| ||||| || ||| |||||||||||| |
|
|
| T |
43479089 |
ttcgtgtggatgagaataatcaaaggaatattaacatggttgagttgagggctaagatacggtcatatttcatttttaatgcagatgtaaatttcagtct |
43478990 |
T |
|
| Q |
117 |
gaaatatgttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaatgttgagaattgaagta |
216 |
Q |
| |
|
|| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| || ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
43478989 |
gagatatgttgatgaagagggtgacttggtgaatcttgtggatgatgatgatttggatgacatgatgaggcagaaattagaattcttgagaattgaagta |
43478890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 43494392 - 43494204
Alignment:
| Q |
25 |
gatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctgatacaaatttcagtctgaaatatg |
124 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||| |||| |||||||||||||||| |||||||||||| | || ||||||||| ||||| ||||| |
|
|
| T |
43494392 |
gatgagaataatgaagtggatcttaacatggttagtttgaaggctaagatacggtctattttcaattttag---tcatgcaaatttcattctgagatatg |
43494296 |
T |
|
| Q |
125 |
ttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaatgttgagaattgaagta |
216 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||| || |||| || |||||||| | ||||| ||||||||| |
|
|
| T |
43494295 |
ttgatgaagagggtgacttggtgaatcttgtggatgatgatgatttgcatgacatgatgagccaacaattagaattcttgaggattgaagta |
43494204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 43452806 - 43452600
Alignment:
| Q |
6 |
gcgcttcaattttcgtgtagatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctgataca |
105 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||| ||||||||| |||||||| ||||||| |||||||| | ||| ||| |||||| | |||||| |
|
|
| T |
43452806 |
gcgcttcaatgttcgtgtggatgagaacaatcggttggatcttaacatggttgggttgaggtctaagatatgttctatttacaatttccctgctgatgtg |
43452707 |
T |
|
| Q |
106 |
aatttcagtctgaaatatgttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatgatgtggtgaggcagaaattagaaatgttga |
205 |
Q |
| |
|
||| | | ||||| |||||||||||| || | |||| |||| |||||||||||||||||||||||||||||||| |||| ||| ||||| || | |||| |
|
|
| T |
43452706 |
aatctaactctgagatatgttgatgaggatggcgacttggtgaatcttgtggatgatgatgatttgcatgatgtgatgagacagcaattaaaattcttga |
43452607 |
T |
|
| Q |
206 |
gaattga |
212 |
Q |
| |
|
|||||| |
|
|
| T |
43452606 |
aaattga |
43452600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 43468018 - 43467867
Alignment:
| Q |
25 |
gatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctgatacaaatttcagtctgaaatatg |
124 |
Q |
| |
|
||||| |||||||| ||||| |||| |||||||| |||||||| ||||||| | ||||||||||||||||| ||| || |||| |||| ||||| |||| |
|
|
| T |
43468018 |
gatgacaataatcacatggaccttaacatggttgggttgagggataagatatgttctgttttcaattttactgctaatgcaaacttcattctgagctatg |
43467919 |
T |
|
| Q |
125 |
ttgatgaagaggacgacacggtgtatcttgtggatgatgatgatttgcatga |
176 |
Q |
| |
|
|||||||||| | ||| |||| |||||||||||||| |||||||| |||| |
|
|
| T |
43467918 |
ttgatgaagatggcgagcaggtgaatcttgtggatgataatgatttgaatga |
43467867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 43475534 - 43475419
Alignment:
| Q |
61 |
ttgagggctaagatacggtctgttttcaattttaccgctgatacaaatttcagtctgaaatatgttgatgaagaggacgacacggtgtatcttgtggatg |
160 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||| | |||| |||| |||| ||||| |||||||||||||| | ||| | |||| |||||||||||| |
|
|
| T |
43475534 |
ttgagggctaagataaggtctattttttattttactgatgatgcaaaattcactctgagctatgttgatgaagatgccgagatggtgaatcttgtggatg |
43475435 |
T |
|
| Q |
161 |
atgatgatttgcatga |
176 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
43475434 |
ataatgatttgaatga |
43475419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 43482802 - 43482674
Alignment:
| Q |
6 |
gcgcttcaattttcgtgtagatgagaataatcaaatggatcttagcatggttgtgttgagggctaagatacggtctgttttcaattttaccgctgataca |
105 |
Q |
| |
|
|||||||||| || ||| ||||| ||||||||||| ||| || ||||||| |||||||||||||||| ||||| |||| ||||||| | |||| | |
|
|
| T |
43482802 |
gcgcttcaatgtttctgtggatgacaataatcaaattgatattgacatggttaggttgagggctaagataaggtctatttttgattttactgatgatgta |
43482703 |
T |
|
| Q |
106 |
aatttcagtctgaaatatgttgatgaaga |
134 |
Q |
| |
|
|| |||| ||||| |||||||||||||| |
|
|
| T |
43482702 |
aaattcactctgagctatgttgatgaaga |
43482674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2730 times since January 2019
Visitors: 8577