View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4410_low_41 (Length: 217)

Name: NF4410_low_41
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4410_low_41
NF4410_low_41
[»] chr2 (1 HSPs)
chr2 (78-196)||(25809048-25809166)
[»] scaffold0011 (1 HSPs)
scaffold0011 (78-196)||(135712-135830)
[»] chr7 (1 HSPs)
chr7 (78-196)||(23068249-23068367)
[»] chr5 (1 HSPs)
chr5 (78-155)||(20746369-20746447)
[»] chr6 (1 HSPs)
chr6 (78-154)||(26909101-26909178)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 25809166 - 25809048
Alignment:
Q  78 tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtgaagttcaatgagatgggggtctgggtatgagagaga 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25809166 tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagttcaatgagatgggggtctgggtatgagagaga 25809067  T
Q  178 tggagttagaagtggggtt 196  Q
    ||| |||||||||||||||    
T  25809066 tggggttagaagtggggtt 25809048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 135830 - 135712
Alignment:
Q  78 tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtgaagttcaatgagatgggggtctgggtatgagagaga 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  135830 tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagtttaattagatgggggtctgggtatgagagaga 135731  T
Q  178 tggagttagaagtggggtt 196  Q
    ||| |||||||||||||||    
T  135730 tggggttagaagtggggtt 135712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 23068249 - 23068367
Alignment:
Q  78 tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtgaagttcaatgagatgggggtctgggtatgagagaga 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  23068249 tatacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagtttaattagatgggggtctgggtatgagagaga 23068348  T
Q  178 tggagttagaagtggggtt 196  Q
    ||| |||||||||||||||    
T  23068349 tggggttagaagtggggtt 23068367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 20746447 - 20746369
Alignment:
Q  78 tatacctgtgtgggtgcatgcttgtaatgagatgagagatggg-ttcaatgggttgtgagaagtgaagttcaatgagat 155  Q
    ||||||||||||||||||||| ||  || |||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  20746447 tatacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtgagaagtggagttcaatgagat 20746369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 26909101 - 26909178
Alignment:
Q  78 tatacctgtgtgggtgcatgcttgtaatgagatgagagatggg-ttcaatgggttgtgagaagtgaagttcaatgaga 154  Q
    ||||||||||||||||||||| ||  || |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  26909101 tatacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtgagaagtggagttcaatgaga 26909178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3098 times since January 2019
Visitors: 8656