View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4410_low_5 (Length: 440)
Name: NF4410_low_5
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4410_low_5 |
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[»] scaffold0036 (1 HSPs) |
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[»] scaffold0263 (1 HSPs) |
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[»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 53699801 - 53699900
Alignment:
Q |
1 |
ttagctaagtttggagtgaacaaaatatgactctaggctttctttgcgagtatggaaggtgaagggaggactttgaagaaaaggatagagaacttcgaga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
T |
53699801 |
ttagctaagtttggagtgaacaaaatatgactctaggctttctttgcgaatatggaaggtgaagggaggactttgaagaaaagaatagagaacttcgaga |
53699900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 33281821 - 33281712
Alignment:
Q |
106 |
gattttgaggggtttattatttttcataatataaaatcc-ccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaat |
204 |
Q |
|
|
||||||||||| |||||| |||||||||||||||||||| ||| | || | |||| ||||||||||||| || ||||||||||| ||| || |||||| |
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|
T |
33281821 |
gattttgagggatttattttttttcataatataaaatcctcctcatttataggaactcaaaaattgtattggaagaggattttgaggggtttaaatgaat |
33281722 |
T |
|
Q |
205 |
tcttcaaatt |
214 |
Q |
|
|
|||||||||| |
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|
T |
33281721 |
tcttcaaatt |
33281712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 39115041 - 39114956
Alignment:
Q |
132 |
taatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat |
218 |
Q |
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|
||||||||||||| | |||||||||| | || |||||||||| |||||||| ||| | ||| ||||||||||||||||||||||| |
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|
T |
39115041 |
taatataaaatcctcctaattttgggga-actcaaattgtattggaggaggactttagagggtttatatgaattcttcaaattcaat |
39114956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 32708723 - 32708816
Alignment:
Q |
128 |
ttcataatataaaatccccttaattttg-ggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt |
220 |
Q |
|
|
||||||||| ||||||| | |||||||| ||||| ||||| ||| || || |||||||||| ||||| ||||||||||||| |||||||||| |
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|
T |
32708723 |
ttcataatacaaaatcctcataattttgaggaattcaaaatttggatcagatgaggattttggaaggtttatatgaattcttttaattcaattt |
32708816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 35989100 - 35989191
Alignment:
Q |
123 |
tatttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||| |||||||||| ||| || | |||||| ||||| |||||||||||| |||||| ||||||| | | ||||||||||||||||||| |
|
|
T |
35989100 |
tattcttcataatattaaaccctcctaatttggggaactaaaaaattgtattagaggagagttttgaaggatttatatgaattcttcaaatt |
35989191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 49183719 - 49183770
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| ||||||| ||||| | ||| ||||||||||||||||||| |
|
|
T |
49183719 |
aaaaattgtattagaggagggttttggagggtttatatgaattcttcaaatt |
49183770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 23420830 - 23420798
Alignment:
Q |
182 |
gattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||||||||||| ||||||||||||||||||| |
|
|
T |
23420830 |
gattttgaaaggtttatatgaattcttcaaatt |
23420798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 34306631 - 34306687
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat |
218 |
Q |
|
|
||||||||||||| | ||||| ||||| | ||| |||||||||| |||||||||||| |
|
|
T |
34306631 |
caaaaattgtattgggggagggttttggagggtttatatgaatttttcaaattcaat |
34306687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 52620883 - 52620831
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||||||||||| ||||||| |||||| ||| |||||||||||||||||| |
|
|
T |
52620883 |
caaaaattgtattggaggagggttttgaggggttaatatgaattcttcaaatt |
52620831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 48417658 - 48417600
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt |
220 |
Q |
|
|
||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
T |
48417658 |
caaaaattgtattggaggaggattttggagggtctatatgaattcttcaaattcaattt |
48417600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 42777384 - 42777290
Alignment:
Q |
125 |
tttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt |
220 |
Q |
|
|
|||||||||||| |||||| | | ||||| | || ||||||||||||| ||||| | ||||||||||| || |||||||||||||||| ||||| |
|
|
T |
42777384 |
tttttcataatacaaaatcttcatcattttagaaactcaaaaattgtattggaggaag-ttttgaaaggtttacatgaattcttcaaatttaattt |
42777290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 36151462 - 36151402
Alignment:
Q |
129 |
tcataatataaaatccccttaattt-tgggaatacaaaaattgtatttgaggaggattttg |
188 |
Q |
|
|
|||||||| |||||||||||||||| ||||| ||||||||||||| | ||||||||||| |
|
|
T |
36151462 |
tcataataaaaaatccccttaatttgggggaactcaaaaattgtattgggggaggattttg |
36151402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 3676562 - 3676511
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
|
|
T |
3676562 |
aaaaattgtattggaggaggattttgaagggtttatatgaattcttcaaatt |
3676511 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 9096346 - 9096398
Alignment:
Q |
166 |
aattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat |
218 |
Q |
|
|
||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
T |
9096346 |
aattgtattggaggaggattttggagggtttatatgaattcttcaaattcaat |
9096398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 19389910 - 19389824
Alignment:
Q |
128 |
ttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||||||| ||||||| | | |||| ||||| |||||||||||| ||||||||||||| | ||| || |||||||||||||||| |
|
|
T |
19389910 |
ttcataatacaaaatcctcctcatttggggaactaaaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatt |
19389824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 32125320 - 32125262
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaatttg |
221 |
Q |
|
|
|||||||||||| |||||||||||| | ||| | |||||||||||||||||||||||| |
|
|
T |
32125320 |
aaaaattgtattggaggaggattttagagggtttgtatgaattcttcaaattcaatttg |
32125262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 37909024 - 37909080
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat |
218 |
Q |
|
|
||||| ||||||| ||||||| ||||| | ||| ||||||||||||||||||||||| |
|
|
T |
37909024 |
caaaagttgtattggaggagggttttggagggtttatatgaattcttcaaattcaat |
37909080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 82770 - 82875
Alignment:
Q |
114 |
ggggtttattatttttcataatataaaatccccttaatttt-gggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaa |
212 |
Q |
|
|
|||||||||| || ||||||||| ||||||| | |||||| ||||| | ||||||||||| ||||| ||||||| | ||| |||||||| |||||||| |
|
|
T |
82770 |
ggggtttatttttcttcataatacaaaatcctcctaatttgagggaactccaaaattgtattggaggatgattttggagggtttatatgaactcttcaaa |
82869 |
T |
|
Q |
213 |
ttcaat |
218 |
Q |
|
|
|||||| |
|
|
T |
82870 |
ttcaat |
82875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 15803212 - 15803263
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| ||||||||||||| | ||| ||||||||||||||||||| |
|
|
T |
15803212 |
aaaaattgtattggaggaggattttggagggtttatatgaattcttcaaatt |
15803263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 26713832 - 26713938
Alignment:
Q |
109 |
tttgaggggtttattatttttcataatat-aaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattct |
207 |
Q |
|
|
||||||||||| ||| || ||||| ||| ||||||| | | |||| ||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| |
|
|
T |
26713832 |
tttgaggggttaatttttcttcatgataagaaaatcctcctcatttggggaactcaaaaattgtattggaggagggttttggagggtttatatgaattct |
26713931 |
T |
|
Q |
208 |
tcaaatt |
214 |
Q |
|
|
||||||| |
|
|
T |
26713932 |
tcaaatt |
26713938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 6695269 - 6695309
Alignment:
Q |
103 |
gaggattttgaggggtttattatttttcataatataaaatc |
143 |
Q |
|
|
|||||||||| ||||||||||||||||||||||| |||||| |
|
|
T |
6695269 |
gaggattttggggggtttattatttttcataatacaaaatc |
6695309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 30183817 - 30183925
Alignment:
Q |
109 |
tttgaggggtttattatttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattctt |
208 |
Q |
|
|
||||||||||| ||| || |||| |||| ||||||| | || ||||||| | || |||||||| || ||||||||||||| | | | | ||||||||||| |
|
|
T |
30183817 |
tttgaggggttcatttttcttcaaaatacaaaatcctcctagttttgggga-actaaaattgttttggaggaggattttggaggctttgtatgaattctt |
30183915 |
T |
|
Q |
209 |
caaattcaat |
218 |
Q |
|
|
|||||||||| |
|
|
T |
30183916 |
caaattcaat |
30183925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 23419556 - 23419496
Alignment:
Q |
128 |
ttcataatataaaatccccttaattttgggaa-tacaaaaattgtatttgaggaggatttt |
187 |
Q |
|
|
||||||||| | ||||||| |||||| ||||| || ||||||||||||||||||||||||| |
|
|
T |
23419556 |
ttcataatacacaatccccctaatttggggaactaaaaaaattgtatttgaggaggatttt |
23419496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 38137964 - 38138016
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||| ||||||| ||||||| | ||| ||||||||||||||||||||||||| |
|
|
T |
38137964 |
caaaatttgtattggaggagggtattggaaggtctatatgaattcttcaaatt |
38138016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 38505390 - 38505340
Alignment:
Q |
164 |
aaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||||||||| ||||||| ||||| | ||| ||||||||||||||||||| |
|
|
T |
38505390 |
aaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt |
38505340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 16424171 - 16424223
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttga-aaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| |||||||||||||| | ||| ||||||||||||||||||| |
|
|
T |
16424171 |
aaaaattgtattagaggaggattttgagagggtttatatgaattcttcaaatt |
16424223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 31305876 - 31305781
Alignment:
Q |
119 |
ttattatttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||| || |||| ||| ||||| || |||||||| ||||| || ||||||||| ||| ||||||||| | ||| ||||||||||||||||||| |
|
|
T |
31305876 |
ttatttttcttcaaaatgtaaaaccctcttaatttggggaacgaaacaattgtattggagaaggattttggagggtttatatgaattcttcaaatt |
31305781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 39778838 - 39778889
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| |||||| |||||| | ||| ||||||||||||||||||| |
|
|
T |
39778838 |
aaaaattgtattggaggagaattttggatggtttatatgaattcttcaaatt |
39778889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 41866174 - 41866123
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| ||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
T |
41866174 |
aaaaattgtattggaggagggttttgaagggtttatataaattcttcaaatt |
41866123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 6943513 - 6943456
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt |
220 |
Q |
|
|
|||||||||||| ||||||| ||||| | ||| |||||||||||||||||| ||||| |
|
|
T |
6943513 |
aaaaattgtattggaggagggttttggagggttaatatgaattcttcaaatttaattt |
6943456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 12306 - 12255
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| ||||||| ||||| | ||| ||||||||||||||||||| |
|
|
T |
12306 |
aaaaattgtattggaggaggtttttggatggtttatatgaattcttcaaatt |
12255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 90932 - 90881
Alignment:
Q |
163 |
aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
|||||||||||| ||||||| ||||| | ||| ||||||||||||||||||| |
|
|
T |
90932 |
aaaaattgtattggaggagggttttggatggtttatatgaattcttcaaatt |
90881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 50587069 - 50587119
Alignment:
Q |
164 |
aaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||| |
|
|
T |
50587069 |
aaaattgcattggaggagggttttgaagggtttatatgaattcttcaaatt |
50587119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 35604314 - 35604257
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaatt |
219 |
Q |
|
|
||||||||||||| |||| ||||||||| ||| |||||||||| |||||||| |||| |
|
|
T |
35604314 |
caaaaattgtattaaaggacgattttgaagggtttatatgaatttttcaaattaaatt |
35604257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 28848847 - 28848795
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt |
214 |
Q |
|
|
||||||||||||| ||||||| ||||| | ||| || |||||||||||||||| |
|
|
T |
28848847 |
caaaaattgtattggaggagggttttggatggtttacatgaattcttcaaatt |
28848795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 51246621 - 51246566
Alignment:
Q |
162 |
caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat |
218 |
Q |
|
|
||||||||||||| ||||||| ||||| | ||| |||||||||| |||||||||||| |
|
|
T |
51246621 |
caaaaattgtattggaggagggttttg-agggtttatatgaatttttcaaattcaat |
51246566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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