View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4410_low_6 (Length: 436)
Name: NF4410_low_6
Description: NF4410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4410_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 24750391 - 24750108
Alignment:
| Q |
13 |
agacaaacaaaatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgcaatg |
112 |
Q |
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| T |
24750391 |
agacaaacaaaatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgcaatg |
24750292 |
T |
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| Q |
113 |
taacttaacattgaacatgccatcatgtgacatagtgttaagaatattgggtacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacac |
212 |
Q |
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| T |
24750291 |
taacttaacattgaacatgccatcatgtgacatagtgttaagaatattgggtacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacac |
24750192 |
T |
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| Q |
213 |
caatgtttgatgcataccaaaaacttatcaaactaacggtgaatagttttccagatattggtggcattgtaactagttaattga |
296 |
Q |
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| T |
24750191 |
caatgtttgatgcataccaaaaacttatcaaactaacggtgaatagttttccagatattggtggcattgtaactagttaattga |
24750108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 24750046 - 24749984
Alignment:
| Q |
358 |
agaatgtgggaggaatgaaaggtggattgaggaaaggggtattggtttaggggaagaaggaga |
420 |
Q |
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| T |
24750046 |
agaatgtgggaggaatgaaaggtggattgaggaaaggggtattggtttaggggaagaaggaga |
24749984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 31330303 - 31330236
Alignment:
| Q |
164 |
tacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttgatgcatacca |
231 |
Q |
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| T |
31330303 |
tacttgaaaccatagttgcttaacaaatacttgttcaatagaagaacaccaatgttggatgaatacca |
31330236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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