View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416-Insertion-1 (Length: 861)
Name: NF4416-Insertion-1
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 353 - 861
Target Start/End: Original strand, 30652265 - 30652775
Alignment:
| Q |
353 |
taagatgaagcgatgcctaattcaaaaacaatcttattaaatcacttatgtttttcaaactgttattactcgtgtttacgtgtcagtgtcatgttcagtg |
452 |
Q |
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| T |
30652265 |
taagatgaaacgatgcctgattcaaaaacaatcttattaaatcacttatgtttttcaaactgttatcagtagtgtttacgtgtcagtgtcattttcactg |
30652364 |
T |
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| Q |
453 |
tttcaaagaatatatatatgtgcatnnnnnnnngtggagagtagctggaagagtacctgtggctgtgacagagacggagagaagaaagcagaagaaaatc |
552 |
Q |
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| T |
30652365 |
tttcaaagaatatatat--gtgcataaaaaaaagtgaagagtagctagaagagtacctgtggctgtgacagagacggagagaagaaagcagaagaaaatc |
30652462 |
T |
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| Q |
553 |
aaggaagtagtcatttggattttggaaatgtgtaaccgtttgtacttagctctttgatgaggtgtagagtgtgaaagtgagtgatatatatgtgatagtg |
652 |
Q |
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| T |
30652463 |
aaggaagtagtcatttggattttggaaatgtgtaaccgtttgtgcttagctctttgatgaggtataaagtgtgaaagtgagtgatatatatgtgatagtg |
30652562 |
T |
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| Q |
653 |
gtgcatatataatatatg----aacgtggttgtcatttgtttccttctttttagccattttgtgcattatgtgtttgataaccgttttgctaaagagact |
748 |
Q |
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| T |
30652563 |
gtgcatatataatatatgtatgaacgtggttgtcatttgtttccttctttttagccattttgtgcattatgtgtttgataaccgttttgctaaagagact |
30652662 |
T |
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| Q |
749 |
aggagccctttgattgttttccacccagcaccacttctaaaatttctccatcacgtttcatatccttttgtttaatcacaactcacaacacagatctact |
848 |
Q |
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| T |
30652663 |
agaagccctttgattgttttccacccagcaccacttctaaaatttctccatcacgtttcatatccttttgtttaatcacacctcacaacacagctctact |
30652762 |
T |
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| Q |
849 |
ctttttgttgaga |
861 |
Q |
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| T |
30652763 |
ctttttgttgaga |
30652775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 30651869 - 30652217
Alignment:
| Q |
8 |
aatgtgaggttccaagtgtcatttcaacaagtgtagctggaggaacaccaccaattcccttgcatttcaattggcctccgcagtctccggtttgacatgt |
107 |
Q |
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| T |
30651869 |
aatgtgaggttccaagtgtcatttcaacaagtgtagctggaggaacaccaccaattcccttgcatttcaattggcctccgcagtctccggtttgacatgt |
30651968 |
T |
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| Q |
108 |
gccttttccggttgtttcgtggaagaaacagccttgtcttccccagattcttcctgcccagtggttagggagttggagaacaagttcttcgccgcttggg |
207 |
Q |
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| T |
30651969 |
gccttttccggttgtttcgtggaagaaacagccttgtcttccccagattcttcctgcccagtggttagggagttggagaacaagttcttcgccgcttggg |
30652068 |
T |
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| Q |
208 |
aggtgaaatccaccatctttgattgaagggtgtccttcattgctgagaattcctggccatacactttccttgcagttgtttacgagtatgagttgtgtcc |
307 |
Q |
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| T |
30652069 |
aggtgaaatccgccatctttgattgaagggtgtccttcattgctgagaattcctggccatacactttccttgcagttgtttacgagtatgagttgtgtcc |
30652168 |
T |
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| Q |
308 |
cgtttccatccttaacaacacctaatattattaacacaaataacctaag |
356 |
Q |
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| T |
30652169 |
cgtttccatccttaacaacacctaatattattaacacaaataacataag |
30652217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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