View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4416-Insertion-12 (Length: 48)

Name: NF4416-Insertion-12
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4416-Insertion-12
NF4416-Insertion-12
[»] chr2 (7 HSPs)
chr2 (9-48)||(32309318-32309357)
chr2 (9-48)||(32565478-32565517)
chr2 (9-48)||(32799709-32799748)
chr2 (9-48)||(32806663-32806702)
chr2 (9-48)||(32815100-32815139)
chr2 (9-45)||(28220475-28220511)
chr2 (10-45)||(28215713-28215748)
[»] chr6 (1 HSPs)
chr6 (9-48)||(301464-301503)


Alignment Details
Target: chr2 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 32309318 - 32309357
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctgaaga 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32309318 aatataatttctatagggattcttgccctcaagctgaaga 32309357  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32565517 - 32565478
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctgaaga 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32565517 aatataatttctatagggattcttgccctcaagctgaaga 32565478  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32799748 - 32799709
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctgaaga 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32799748 aatataatttctatagggattcttgccctcaagctgaaga 32799709  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32806702 - 32806663
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctgaaga 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32806702 aatataatttctatagggattcttgccctcaagctgaaga 32806663  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32815139 - 32815100
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctgaaga 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32815139 aatataatttctatagggattcttgccctcaagctgaaga 32815100  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 28220475 - 28220511
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctga 45  Q
    ||||||||||||||| || ||||||||||||||||||    
T  28220475 aatataatttctataaggtttcttgccctcaagctga 28220511  T

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Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 28215748 - 28215713
Alignment:
Q  10 atataatttctatagggattcttgccctcaagctga 45  Q
    |||||||||||||| ||||||||||||| |||||||    
T  28215748 atataatttctataaggattcttgccctgaagctga 28215713  T

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Target: chr6 (Bit Score: 36; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 301464 - 301503
Alignment:
Q  9 aatataatttctatagggattcttgccctcaagctgaaga 48  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  301464 aatataatttctatagggattctagccctcaagctgaaga 301503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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