View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416-Insertion-7 (Length: 194)
Name: NF4416-Insertion-7
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 145452 - 145638
Alignment:
| Q |
8 |
caagcagcagtgttgatacaaaaaagattgatgtagccgaagatgttgtagccgagaaatctgaaattgtaattgttgacaattaccgtgagccagtgga |
107 |
Q |
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| T |
145452 |
caagcagcagtgttgatacaaaaaagattgatgtagccgaagatgttgtagcagagaaatctgaaattgtaattgttgacaattaccgtgagccagtgga |
145551 |
T |
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| Q |
108 |
agtgcctccatttttgaatgttcaaagaaattcatgggagattattgtgaatgaatctcatgtacaaccaaatcacaagcttgtaag |
194 |
Q |
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| T |
145552 |
agtgcctccatttttgaatgttaaaagaaattcatgggagattattgtgaatgaatatcatgtacatccaaatcacaagcttgtaag |
145638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 14572804 - 14572688
Alignment:
| Q |
78 |
aattgttgacaattaccgtgagccagtggaagtgcctccatttttgaatgttcaaagaaattcatgggagattattgtgaatgaatctcatgtacaacca |
177 |
Q |
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| T |
14572804 |
aattcttgacaattatcgtgagccagttgaattgcctccattcttgaatgttaagagaaattcatgggagatcattgtcaatgaatctcatattcaaccc |
14572705 |
T |
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| Q |
178 |
aatcacaagcttgtaag |
194 |
Q |
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| T |
14572704 |
aatcacaaacttgtaag |
14572688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 8e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 19784771 - 19784655
Alignment:
| Q |
78 |
aattgttgacaattaccgtgagccagtggaagtgcctccatttttgaatgttcaaagaaattcatgggagattattgtgaatgaatctcatgtacaacca |
177 |
Q |
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|||| |||||||||| ||||||||||| ||| |||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||||| | ||||| |
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| T |
19784771 |
aattcttgacaattatcgtgagccagttgaattgcctccattcttgaatgttaagagaaattcatgggagatcattgtcaatgaatctcatattcaaccc |
19784672 |
T |
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| Q |
178 |
aatcacaagcttgtaag |
194 |
Q |
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| T |
19784671 |
aatcacaaacttgtaag |
19784655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 21650423 - 21650539
Alignment:
| Q |
78 |
aattgttgacaattaccgtgagccagtggaagtgcctccatttttgaatgttcaaagaaattcatgggagattattgtgaatgaatctcatgtacaacca |
177 |
Q |
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|||| |||||||||| |||||||| || ||| |||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||||| | ||||| |
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| T |
21650423 |
aattcttgacaattatcgtgagcccgttgaattgcctccattcttgaatgttaagagaaattcatgggagatcattgtcaatgaatctcatatgcaaccc |
21650522 |
T |
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| Q |
178 |
aatcacaagcttgtaag |
194 |
Q |
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| T |
21650523 |
aatcacaaacttgtaag |
21650539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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