View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4416-Insertion-8 (Length: 111)

Name: NF4416-Insertion-8
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4416-Insertion-8
NF4416-Insertion-8
[»] chr6 (11 HSPs)
chr6 (8-108)||(45257-45357)
chr6 (8-111)||(4206184-4206287)
chr6 (22-111)||(32116105-32116194)
chr6 (29-111)||(32120345-32120427)
chr6 (24-111)||(29337690-29337777)
chr6 (23-88)||(22986358-22986423)
chr6 (23-88)||(23801971-23802036)
chr6 (8-100)||(34304924-34305016)
chr6 (11-101)||(12401752-12401842)
chr6 (31-83)||(26225283-26225335)
chr6 (23-83)||(8374901-8374961)
[»] chr2 (10 HSPs)
chr2 (20-111)||(17345054-17345145)
chr2 (8-111)||(9685003-9685106)
chr2 (8-111)||(20142328-20142431)
chr2 (8-100)||(41867496-41867588)
chr2 (8-111)||(4412654-4412757)
chr2 (21-111)||(44686833-44686923)
chr2 (26-111)||(33612147-33612232)
chr2 (8-111)||(19161414-19161516)
chr2 (8-100)||(28225427-28225519)
chr2 (8-52)||(18744606-18744650)
[»] chr8 (9 HSPs)
chr8 (7-100)||(37517516-37517609)
chr8 (20-111)||(24125444-24125535)
chr8 (8-101)||(500653-500746)
chr8 (31-111)||(39435083-39435163)
chr8 (34-108)||(25021418-25021492)
chr8 (20-100)||(42921730-42921810)
chr8 (34-81)||(4007057-4007104)
chr8 (8-85)||(36005943-36006020)
chr8 (8-111)||(10189959-10190062)
[»] chr4 (6 HSPs)
chr4 (8-109)||(53170916-53171017)
chr4 (21-111)||(56461715-56461805)
chr4 (31-108)||(16957955-16958031)
chr4 (7-84)||(48505785-48505862)
chr4 (50-111)||(12917996-12918057)
chr4 (8-72)||(32335307-32335370)
[»] chr1 (10 HSPs)
chr1 (7-105)||(28040714-28040812)
chr1 (20-88)||(37200694-37200762)
chr1 (7-86)||(19035868-19035947)
chr1 (8-111)||(38731999-38732102)
chr1 (7-111)||(7794502-7794606)
chr1 (22-109)||(22375137-22375224)
chr1 (34-111)||(34644982-34645059)
chr1 (64-111)||(22347293-22347340)
chr1 (24-111)||(35386920-35387007)
chr1 (48-100)||(23044324-23044376)
[»] chr7 (10 HSPs)
chr7 (7-111)||(24528006-24528110)
chr7 (8-111)||(4501674-4501777)
chr7 (8-111)||(5827670-5827773)
chr7 (23-111)||(10905519-10905607)
chr7 (31-101)||(32585573-32585643)
chr7 (20-101)||(47679550-47679631)
chr7 (50-92)||(45613472-45613514)
chr7 (52-101)||(28516919-28516968)
chr7 (7-74)||(4175672-4175739)
chr7 (51-105)||(43857286-43857340)
[»] chr3 (7 HSPs)
chr3 (8-111)||(53786124-53786227)
chr3 (20-109)||(52411502-52411591)
chr3 (8-108)||(29862216-29862316)
chr3 (20-81)||(52741127-52741188)
chr3 (8-84)||(7501727-7501803)
chr3 (8-99)||(35236556-35236647)
chr3 (34-100)||(37992743-37992809)
[»] scaffold0186 (1 HSPs)
scaffold0186 (7-111)||(20137-20241)
[»] chr5 (12 HSPs)
chr5 (8-110)||(25662905-25663007)
chr5 (8-101)||(27337119-27337212)
chr5 (20-95)||(3113766-3113841)
chr5 (8-111)||(15291611-15291714)
chr5 (23-111)||(433708-433796)
chr5 (24-111)||(26212187-26212274)
chr5 (22-76)||(35456213-35456267)
chr5 (51-101)||(38446592-38446642)
chr5 (24-100)||(32269397-32269473)
chr5 (52-111)||(13166542-13166601)
chr5 (31-93)||(27355328-27355390)
chr5 (53-101)||(6534196-6534244)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 1e-50; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-50
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 45257 - 45357
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45257 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 45356  T
Q  108 t 108  Q
    |    
T  45357 t 45357  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 4206184 - 4206287
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||| | |||||||||||||| || ||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  4206184 catatgtcaccagtggagtaccgtactatccttagatctcgccttacgattccactatttcctattgatgaggcgtgccctgtttgtcgtaaggcgtgcc 4206283  T
Q  108 tgga 111  Q
    ||||    
T  4206284 tgga 4206287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 32116194 - 32116105
Alignment:
Q  22 ggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||| |||||||||| |||||||   |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32116194 ggagtaccatactatccctagatattgtcttatgattcaactatttcctattgatgatgtgtgccctgtttgtcgtaaggtgtgcctgga 32116105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 32120427 - 32120345
Alignment:
Q  29 catactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||| ||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  32120427 catacaatctttatatatcgccttatgattccaatatttcctattgatcaggtgtgccctatttgtcgtaaggtgtgtctgga 32120345  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 29337690 - 29337777
Alignment:
Q  24 agtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||||||| |||||||||||||| ||||||||||||  ||||| ||||| |||||| ||||| ||||| ||||||||  ||||||||    
T  29337690 agtatcatattatccttagatatcgccttatgattcctctattttctattaatgaggcgtgccatgtttctcgtaaggcatgcctgga 29337777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 22986423 - 22986358
Alignment:
Q  23 gagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccct 88  Q
    ||||||||||| ||||| ||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  22986423 gagtatcatacaatcctcagatatcgcctcatgattccattacatcctattgatgaggtgtgccct 22986358  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 23801971 - 23802036
Alignment:
Q  23 gagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccct 88  Q
    ||||||||||| ||||| ||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  23801971 gagtatcatacaatcctcagatatcgcctcatgattccattacatcctattgatgaggtgtgccct 23802036  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 34305016 - 34304924
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    ||||||||| | |||||||| | |||||||||| ||||    |||||||||||| |||||| |||||||||||| ||||||  ||||||||||    
T  34305016 catatgtcaccagtggagtaccgtactatccttcgatactgtcttatgattccattatttcatattgatgaggtttgccctacttgtcgtaag 34304924  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 12401842 - 12401752
Alignment:
Q  11 atgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    |||||| | |||||||| | || ||| |||||||||   ||||||||| || ||||| ||||||||||| ||||||||||||| |||||||    
T  12401842 atgtcaccagtggagtaccgtattatgcttagatattgtcttatgattacactattttctattgatgagttgtgccctgtttgccgtaagg 12401752  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 26225283 - 26225335
Alignment:
Q  31 tactatccttagatatcaccttatgattccaatatttcctattgatgaggtgt 83  Q
    ||||||||||||||||||||  ||||||||| |||||| |||| |||||||||    
T  26225283 tactatccttagatatcaccccatgattccattatttcttattaatgaggtgt 26225335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 8374901 - 8374961
Alignment:
Q  23 gagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgt 83  Q
    ||||||| ||||||||| | ||||| | ||||||||||| || || |||||||||||||||    
T  8374901 gagtatcgtactatcctcatatatcgcattatgattccattactttctattgatgaggtgt 8374961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 17345145 - 17345054
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17345145 gtggagtatcgtactatccttagatatcgccttatgaatccactatttcctattgatgaggtgtgccctgtttgtcgtaaggcgtgcctgga 17345054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 9685003 - 9685106
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||| |    
T  9685003 catatgtcaccagtggagtatcgtactatccttagatatcgccttacgattccactatttcctattgatgaggcgtgccctgtttgtcgtaaggcgtgtc 9685102  T
Q  108 tgga 111  Q
    ||||    
T  9685103 tgga 9685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 20142328 - 20142431
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||||  ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |    
T  20142328 catatgtcaacagtggagtattgtactatccttagatatcgccttatgattccactatttcctaatgatgaggtgtgccctgtttgtcgtaaggcgtgtc 20142427  T
Q  108 tgga 111  Q
    ||||    
T  20142428 tgga 20142431  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 41867496 - 41867588
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    ||||||||| | |||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  41867496 catatgtcaccagtggagtatcgtactatccttagatatcgtcttatgattccactatttcctattgatgaggtgtgctctgtttgtcgtaag 41867588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 4412654 - 4412757
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||| |    
T  4412654 catatgtcaccagtggagtatcgtactatccttagatatcgtcttatgattccactatttcctattgatgaggtgtgccttgttggtcgtaaggcgtgtc 4412753  T
Q  108 tgga 111  Q
    ||||    
T  4412754 tgga 4412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 44686923 - 44686833
Alignment:
Q  21 tggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||||||| |||||||||| ||||||  |||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||| |||||    
T  44686923 tggagtatcgtactatccttcgatatcgtcttatgattccactatgtcctattgatgaggtgtgtcctgtttgtcgtaagatgtgtctgga 44686833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 33612147 - 33612232
Alignment:
Q  26 tatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||| ||||||| ||||||||||||||||||| || |||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  33612147 tatcacactatccctagatatcaccttatgatttcactatttcatattgatgaggtgtgtcatgtttgtcgtaaagtgtgtctgga 33612232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 19161414 - 19161516
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||||| |||||||||| ||||||| |||||||||  ||||||||| || ||||||||||  ||||||| ||| ||||||||||||||| | |||    
T  19161414 catatgtcatcagtggagtatcgtactatcattagatatcgtcttatgattgcactatttcctatcaatgaggt-tgctctgtttgtcgtaaggcgcgcc 19161512  T
Q  108 tgga 111  Q
    ||||    
T  19161513 tgga 19161516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 28225519 - 28225427
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    ||||||||| | | |||||| | |||||||| | ||||||| |||||||||||| ||||| | |||||||||||||||| |||||||||||||    
T  28225519 catatgtcaccagcggagtaccgtactatccgtcgatatcatcttatgattccattattttccattgatgaggtgtgccatgtttgtcgtaag 28225427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 18744606 - 18744650
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcacctt 52  Q
    ||||||||| | |||||||||| ||||||||||||||||| ||||    
T  18744606 catatgtcaccagtggagtatcgtactatccttagatatcgcctt 18744650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 5e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 37517609 - 37517516
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    |||||||||| | ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37517609 acatatgtcaccagtggagtatcataatatccttagatatcgccttatgattccactatttcctattgatgaggtgtgccctgtttatcgtaag 37517516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 24125535 - 24125444
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||||| | ||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  24125535 gtggagtaccgtactatccttaaatatcgcattatgattccactatttcctattgatgaggtgtgccctgtttgtcgtaaggcgtgtctgga 24125444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 500746 - 500653
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    ||||||||| |  ||||||| | ||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  500746 catatgtcaccaatggagtaccgtactatccttagatattgccttacgattccaatatttcctattgatgaggtgtgacctgtttgttgtaagg 500653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 39435163 - 39435083
Alignment:
Q  31 tactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||||||| ||||||  |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  39435163 tactatccttcgatatcgtcttatgattccactttttcctattgatgaggtgtgccctgtttgtcgtaaggcgtgtctgga 39435083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 25021418 - 25021492
Alignment:
Q  34 tatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcct 108  Q
    |||||||||||||| ||| ||||||||| |||||| ||||||||||||||||| | ||| |||||||| ||||||    
T  25021418 tatccttagatatcgcctcatgattccactatttcatattgatgaggtgtgccatatttatcgtaaggcgtgcct 25021492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 42921730 - 42921810
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    |||||||||||||||||  || ||||||  |||||||||||| |||||| ||||||||||||| |||  ||||||||||||    
T  42921730 gtggagtatcatactattattcgatatcgtcttatgattccattatttcttattgatgaggtgcgcctcgtttgtcgtaag 42921810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 4007057 - 4007104
Alignment:
Q  34 tatccttagatatcaccttatgattccaatatttcctattgatgaggt 81  Q
    ||||||||||||||  |||||||||||| ||||| |||||||||||||    
T  4007057 tatccttagatatcgtcttatgattccactattttctattgatgaggt 4007104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 36006020 - 36005943
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgc 85  Q
    ||||||||| | || |||||| |||||||||| | ||||  | ||||||||| | ||||||||||||||||| |||||    
T  36006020 catatgtcaccagtagagtattatactatcctcaaatatggctttatgattctattatttcctattgatgagatgtgc 36005943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 10190062 - 10189959
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||| ||||| |||||||||| || ||||   ||||||   |||||||||| | |||||| |||||||||  ||  ||| ||||| |||||||||||||    
T  10190062 catatatcatcagtggagtatcgtaatatctgcagatattgtcttatgattctattatttcatattgatgacatgcaccccgtttgccgtaaggtgtgcc 10189963  T
Q  108 tgga 111  Q
    ||||    
T  10189962 tgga 10189959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 53171017 - 53170916
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||| ||||| |||||||||| ||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  53171017 catatatcatcagtggagtatcgtactatctttagatatcaccttacgattccactattttctattgatgaggtgtgccctgtttgtcgtaaggcgtgcc 53170918  T
Q  108 tg 109  Q
    ||    
T  53170917 tg 53170916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 56461715 - 56461805
Alignment:
Q  21 tggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||||||| ||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  56461715 tggagtatcgtaccatccttagatataaccttatgattccactattttctattgatgaggtgtgccctgtttttcgtaaggtgtgcctgga 56461805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 16958031 - 16957955
Alignment:
Q  31 tactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcct 108  Q
    ||||||||||||||||  ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  16958031 tactatccttagatatg-ccttatgattccactattttctattgatgaggtgtgccttgtttgtcgtaaggcgtgcct 16957955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 48505785 - 48505862
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtg 84  Q
    |||||||| ||| |||||||||| || |||||||||||||| ||||||||||||| |||||| ||||||||| |||||    
T  48505785 acatatgttatcggtggagtatcgtattatccttagatatcgccttatgattccactatttcatattgatgatgtgtg 48505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 12917996 - 12918057
Alignment:
Q  50 cttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||||||| || ||||| ||||||||||| |||||| |||||||||||||||||| |||||    
T  12917996 cttatgatttcactattttctattgatgagatgtgccatgtttgtcgtaaggtgtgtctgga 12918057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 32335370 - 32335307
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctat 72  Q
    ||||||||||  |||||||| ||||||||| ||||||||| || |||||||||||||||||||||    
T  32335370 catatgtcattagtggagtaccatactatc-ttagatatcgccgtatgattccaatatttcctat 32335307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 28040714 - 28040812
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtg 105  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||| ||||| |||||    
T  28040714 acatatgtcaccagtggagtatcatactatccttagatatcgccttatgattccattatttcctaatgatgtggtgtgccctgtttgccgtaatgtgtg 28040812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 37200762 - 37200694
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccct 88  Q
    |||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  37200762 gtggagtatcatactatccttagatatcgccttataattccactatttcctattgatgaggtgtgccct 37200694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 19035947 - 19035868
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgcc 86  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||    
T  19035947 acatatgtcaccagtggagtatcatactatccttagatatcgccttatgattccactatatccttttgatgaggtgtgcc 19035868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 38732102 - 38731999
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| |||||||| ||||||| || ||   ||||| ||||||||||||||    
T  38732102 catatgtcatcagtggagtaccgtactatccttagatatcgccttatgattccactatttcctgttgatgatgtatgttttgtttttcgtaaggtgtgcc 38732003  T
Q  108 tgga 111  Q
    ||||    
T  38732002 tgga 38731999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 7794502 - 7794606
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgc 106  Q
    |||||| ||| | |||||||| ||| |||||||| |||||| ||||||||||||| |||||| ||||||| |||||  || |||||||||||||| |||     
T  7794502 acatatatcaccagtggagtaccatgctatcctttgatatcgccttatgattccattatttcatattgataaggtgcaccttgtttgtcgtaaggcgtgt 7794601  T
Q  107 ctgga 111  Q
    |||||    
T  7794602 ctgga 7794606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 22375224 - 22375137
Alignment:
Q  22 ggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctg 109  Q
    |||||| | ||||||||||||||||| ||||||||||| | ||||||||| ||||||||| | || |||||| | ||||| |||||||    
T  22375224 ggagtaacgtactatccttagatatcgccttatgattctactatttcctactgatgaggttttccatgtttggcttaaggcgtgcctg 22375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 34645059 - 34644982
Alignment:
Q  34 tatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||||| ||||||  |||||||||||| ||||| ||| |||||||| |||||||||||||| ||||| ||| |||||    
T  34645059 tatccttcgatatcgtcttatgattccactattttctagtgatgaggagtgccctgtttgtcataaggcgtgtctgga 34644982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 22347340 - 22347293
Alignment:
Q  64 atttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||    
T  22347340 attttctattgatgaggtgtgccctgtttgtcgtaaggcatgcctgga 22347293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 35386920 - 35387007
Alignment:
Q  24 agtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||| |||||||| ||||||||||  ||||| ||| || |||||  |||||||||||  || ||||||||||||||||||||| ||||    
T  35386920 agtaccatactattcttagatatcgacttataatttcactattttttattgatgaggcatgtcctgtttgtcgtaaggtgtgcttgga 35387007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 23044376 - 23044324
Alignment:
Q  48 accttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    |||| ||||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  23044376 acctcatgattccattatttcctatggatgagatgtgctctgtttgtcgtaag 23044324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 24528110 - 24528006
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgc 106  Q
    |||||||||| | |||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||| ||||| |||||||||||||||||||| || |    
T  24528110 acatatgtcaccagtggagtatcatactatcattagatatcgccttatgattccactatttcttattgttgaggggtgccctgtttgtcgtaaggcgtac 24528011  T
Q  107 ctgga 111  Q
    |||||    
T  24528010 ctgga 24528006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 4501777 - 4501674
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| |  ||||||||| |||||||||||||||||  |||||||||||| ||||| |||||||||||||||| | |||||||||||||| |||||    
T  4501777 catatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattattttctattgatgaggtgtgtcatgtttgtcgtaaggcgtgcc 4501678  T
Q  108 tgga 111  Q
    ||||    
T  4501677 tgga 4501674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 5827773 - 5827670
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||| | |||||||||| ||||||  |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |    
T  5827773 catatgtcaccagtggagtaccgtactatccttcgatatcgtcttatgattccactatttcttattgatgaggtgtgccctgtttgtcgtaaggcgtgtc 5827674  T
Q  108 tgga 111  Q
    ||||    
T  5827673 tgga 5827670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 10905607 - 10905519
Alignment:
Q  23 gagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||| ||||||||||||  ||||||||    
T  10905607 gagtatcgtactatccttagatatcatcttatgattccactatttctcattgatgaggtgtgccctatttgtcgtaaggcttgcctgga 10905519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 32585643 - 32585573
Alignment:
Q  31 tactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    |||||||||||||| ||  |||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  32585643 tactatccttagatttcgtcttatgattccactatttcctattaatgaggtgtgccctatttgtcgtaagg 32585573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 47679631 - 47679550
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    |||||||| | |||||||| |||||||  ||| ||||||||| ||||| ||||||| ||||||||| |||||||||||||||    
T  47679631 gtggagtaacgtactatccatagatattgcctcatgattccactatttgctattgacgaggtgtgctctgtttgtcgtaagg 47679550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 45613472 - 45613514
Alignment:
Q  50 cttatgattccaatatttcctattgatgaggtgtgccctgttt 92  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  45613472 cttatgattccactatttcctattgatgaggtgtgtcctgttt 45613514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 28516919 - 28516968
Alignment:
Q  52 tatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    |||||||||| | |||  ||||||||||||||||||||||||||||||||    
T  28516919 tatgattccacttttttttattgatgaggtgtgccctgtttgtcgtaagg 28516968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 4175739 - 4175672
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattg 74  Q
    ||||||||||  ||||||||| | |||||||||||||||   ||||||||||||| |||| |||||||    
T  4175739 acatatgtcacatgtggagtaccgtactatccttagatagtgccttatgattccactattccctattg 4175672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 43857340 - 43857286
Alignment:
Q  51 ttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtg 105  Q
    ||||||||||| | ||| |||||||||||||||  | ||||||||||||||||||    
T  43857340 ttatgattccactgttttctattgatgaggtgtttcttgtttgtcgtaaggtgtg 43857286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 53786227 - 53786124
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||||| || |||||||||||||| ||||||||||| | ||||||||||||||||||||| || |||||||||||||| |||||    
T  53786227 catatgtcaccagtggagtatcgtattatccttagatatcgccttatgattcaactatttcctattgatgaggtgtaccttgtttgtcgtaaggcgtgcc 53786128  T
Q  108 tgga 111  Q
    ||||    
T  53786127 tgga 53786124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 52411502 - 52411591
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctg 109  Q
    |||||||||| | ||||||||||||||| |||| |||||||| | |||||||||||| ||||||| |||||||||||||||| |||||||    
T  52411502 gtggagtatcgtgctatccttagatatcgccttgtgattccattgtttcctattgataaggtgtgtcctgtttgtcgtaaggcgtgcctg 52411591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 29862316 - 29862216
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | ||| |||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | || ||| |||||||| |||||    
T  29862316 catatgtcaccagtgaagtagcgtactatccttagatatcgccttatgattccattatttcctattgatgaggtgttctctatttatcgtaaggcgtgcc 29862217  T
Q  108 t 108  Q
    |    
T  29862216 t 29862216  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 52741127 - 52741188
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggt 81  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||    
T  52741127 gtggagtatcatactatccttagataccatcttatgattccactatttcatattgatgaggt 52741188  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 7501727 - 7501803
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtg 84  Q
    ||||||||||| |||||||| | ||||||||||||||||| |||||| |||||  |||||| |||||||||||||||    
T  7501727 catatgtcatcagtggagtaccgtactatccttagatatcgccttataattcctctatttcatattgatgaggtgtg 7501803  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 35236647 - 35236556
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaa 99  Q
    ||||||||| | |||||||| ||||||||||||||||||| | |||||||   | ||||||||||||||||||||||| | || ||||||||    
T  35236647 catatgtcaccagtggagtaccatactatccttagatatcgctttatgatgttattatttcctattgatgaggtgtgctccgtctgtcgtaa 35236556  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 37992809 - 37992743
Alignment:
Q  34 tatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    |||||||||||||| |||||||||| |||||| ||  ||||||||||||||| ||||||||||||||    
T  37992809 tatccttagatatcgccttatgatttcaatatatctaattgatgaggtgtgctctgtttgtcgtaag 37992743  T

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Target: scaffold0186 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 20241 - 20137
Alignment:
Q  7 acatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgc 106  Q
    |||||||||| |  ||||||||  | |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||| ||||    
T  20241 acatatgtcaacattggagtatggtgctatccttagatatcaccttatgattacattatttcctattgatgaggtgtgccctttttgtcataaggcgtgc 20142  T
Q  107 ctgga 111  Q
    |||||    
T  20141 ctgga 20137  T

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Target: chr5 (Bit Score: 55; Significance: 4e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 25662905 - 25663007
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | ||||| || | |||||||||| ||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |    
T  25662905 catatgtcaccagtggaataccgtactatccttcgatatcgtcttatgattccactatttcctattgatgaggtgtgccttgtttgtcgtaaggcgtgtc 25663004  T
Q  108 tgg 110  Q
    |||    
T  25663005 tgg 25663007  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 27337212 - 27337119
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    ||||||||| | || ||||| | |||||||||| ||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  27337212 catatgtcaccagttgagtaccgtactatccttcgatatcgtcttatgattccactttttcctattgatgaggtgtgccctgtttgtcgtaagg 27337119  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 3113766 - 3113841
Alignment:
Q  20 gtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtc 95  Q
    |||||||||| ||||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  3113766 gtggagtatcgtactatccttagatattgccttatgattccactatctcctattgatgaggtgtgccctatttgtc 3113841  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 15291611 - 15291714
Alignment:
Q  8 catatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcc 107  Q
    ||||||||| | |||||||||| |||||||||||||||||  | |||||||||| ||||| |||||||||||||||| | ||||| |||||||| ||| |    
T  15291611 catatgtcaccagtggagtatcgtactatccttagatatcgtcgtatgattccactattttctattgatgaggtgtgtcatgtttatcgtaaggcgtgtc 15291710  T
Q  108 tgga 111  Q
    ||||    
T  15291711 tgga 15291714  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 433796 - 433708
Alignment:
Q  23 gagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||||  ||||||||| ||||||  |||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  433796 gagtatcggactatccttcgatatcgtcttatgattccactttttcctattgatgaggtgtgcactgtttgtcgtaaggcgtgtctgga 433708  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 26212187 - 26212274
Alignment:
Q  24 agtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||| ||||  ||||||||||| | |||||||| || |||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  26212187 agtatcgtactgaccttagatatcgctttatgatttcattatttcctattgatgaagtgtgtcctgtttgtcgtaaggcgtgcctgga 26212274  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 35456267 - 35456213
Alignment:
Q  22 ggagtatcatactatccttagatatcaccttatgattccaatatttcctattgat 76  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||  |||||||    
T  35456267 ggagtaccatactatccttagatatcaccttatgattccactattttatattgat 35456213  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 38446642 - 38446592
Alignment:
Q  51 ttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||||||||||    
T  38446642 ttatgattccattattttccattgatgaggtgtgcccggtttgtcgtaagg 38446592  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 32269397 - 32269473
Alignment:
Q  24 agtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaag 100  Q
    ||||| ||||||||||| |||||   |||||||||||| ||||| ||||||||||||| || | ||| |||||||||    
T  32269397 agtattatactatccttggatattgtcttatgattccactattttctattgatgaggtatgtcttgtgtgtcgtaag 32269473  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 13166542 - 13166601
Alignment:
Q  52 tatgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaaggtgtgcctgga 111  Q
    |||||||||| ||||||  ||||||||||||||| |||||||| |||||| ||| |||||    
T  13166542 tatgattccactatttctgattgatgaggtgtgctctgtttgttgtaaggcgtgtctgga 13166601  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 27355328 - 27355390
Alignment:
Q  31 tactatccttagatatcaccttatgattccaatatttcctattgatgaggtgtgccctgtttg 93  Q
    ||||| ||| ||||||||| | |||||| || ||||| |||||||||||||||||||| ||||    
T  27355328 tactaacctcagatatcacatcatgatttcattattttctattgatgaggtgtgccctatttg 27355390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 6534196 - 6534244
Alignment:
Q  53 atgattccaatatttcctattgatgaggtgtgccctgtttgtcgtaagg 101  Q
    ||||||| | |||||| ||||||||||||||| | ||||||||||||||    
T  6534196 atgattctattatttcttattgatgaggtgtgtcatgtttgtcgtaagg 6534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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