View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_high_10 (Length: 429)
Name: NF4416_high_10
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 185 - 423
Target Start/End: Complemental strand, 9008035 - 9007797
Alignment:
| Q |
185 |
acaaaggctccaaatctgtcacagaatacctacacggtattaaggcactttcagatgaacttgctgtcatcaattcaccactagatgatattgatctagt |
284 |
Q |
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| T |
9008035 |
acaaaggctccaaatctgtcacagaatacctacacggtattaaggcactttcagatgaacttgctgtcatcaattcaccactagatgatattgatctagt |
9007936 |
T |
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| Q |
285 |
tatccactcactcaacggccttggtccggagtacaaagaaatatccgctgctcttcgtgctcgtgagaatcctattggatttgaagaacttcatgatcta |
384 |
Q |
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| T |
9007935 |
tatccactcactcaacggccttggtccggagtacaaagaaatatccgctgctcttcgtgctcgtgagaatcctattggatttgaagaacttcatgatcta |
9007836 |
T |
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| Q |
385 |
ctacaagattatgaaacccacctcactcgtgatgatgtc |
423 |
Q |
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| T |
9007835 |
ctacaagattatgaaacccacctcactcgcgatgatgtc |
9007797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 9008532 - 9008713
Alignment:
| Q |
16 |
caagatcaactcatacttcatgccattctctcctccatggatcagaatgttgtcacaatgcttggcagtgcaaaaaactccaaacaagcatgggacatac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9008532 |
caagatcaactcatacttcatgccattctctcctccatggatcagaatgttgtcacaatgcttggtagtgcaaaaaactccaaacaagcatgggacatac |
9008631 |
T |
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| Q |
116 |
tcaacaaaacctttgctagcaaaacgcgaacacgtataatgcaactcaaggagcgactgacaaggtacaacaaaggctccaa |
197 |
Q |
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| T |
9008632 |
tcaacaaaacctttgctagcaaaacgcgaacacgtataatgcaactcaaggagcgactgacaaggtacaacaagggctccaa |
9008713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 54082676 - 54082771
Alignment:
| Q |
16 |
caagatcaactcatacttcatgccattctctcctccatggatcagaatgttgtcacaatgcttggcagtgcaaaaaactccaaacaagcatgggac |
111 |
Q |
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||||||||||| | |||||| ||||||||| |||||||||||||||||| |||| | |||||||||| | ||| |||||||||||||||||| |
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| T |
54082676 |
caagatcaacttgtttttcatgtcattctctcatccatggatcagaatgttatcactctacttggcagtgaacaaacttccaaacaagcatgggac |
54082771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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