View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4416_high_13 (Length: 366)
Name: NF4416_high_13
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 47656213 - 47656546
Alignment:
| Q |
18 |
caatggtggctttgaaagttcctaaaagaaatggtggctttgaaagtaatttgacataaaaatgctctaatggtagtaaaaagagtagcctcccatggcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47656213 |
caatggtggctttgaaagttcctaaaaaaaatggtggctttgaaagtaatttgacataaaaatgctctaatggtagtaaaaagagtaacctcccatggcg |
47656312 |
T |
|
| Q |
118 |
gtgcctttccaaatgttctcgccgccgacggcgacgccggaactggtaaacatgttgaaacaagtcgcctgccagagacatattgttggtggtcattctg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
47656313 |
gtgcctttccaaatgttctcgccgccgacagcgacgtcggaactagtaaacatgttgaaacaattcacctgccagagacatattgttggtggtgattctg |
47656412 |
T |
|
| Q |
218 |
cagtggttggcaac--atggcagcaaccaattctggtgttatgatggtggttggggcggcaatgatcaggacaacagcgaagacggtgcttgcggctttt |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
47656413 |
cagtggttggcaacctgtggcagcaaccaattctggtgttatgatggtggttggggcgacaatgatcaagacaacggcggagacggtgcttgcggctttt |
47656512 |
T |
|
| Q |
316 |
atgaaggtgctggcctagagacgtgtacgcacag |
349 |
Q |
| |
|
||||||||||||| | ||||||||||| |||||| |
|
|
| T |
47656513 |
atgaaggtgctggtcaagagacgtgtaagcacag |
47656546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 58 - 349
Target Start/End: Original strand, 54922704 - 54922995
Alignment:
| Q |
58 |
tgaaagtaatttgacataaaaatgctctaatggtagtaaaaagagtagcctcccatggcggtgcctttccaaatgttctcgccgccgacggcgacgccgg |
157 |
Q |
| |
|
|||||||||| ||||| |||| |||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||| || ||| || ||| | ||| |
|
|
| T |
54922704 |
tgaaagtaatctgaca--aaaacgctccaatggtagtaaaaagagtaacctcccacgccggtgcctttccaaatgttctctcctccggcgccgatgtcgg |
54922801 |
T |
|
| Q |
158 |
aactggtaaacatgttgaaacaagtcgcctgccagagacatattgttggtggtcattctgcagtggttggcaaca--tggcagcaaccaattctggtgtt |
255 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
54922802 |
aactggtaaacatgttgaaactagtcgcgtgccagagacatattgttggtggtgactctacagtggttggcaacatgtggcagcaaccaactctggtgtt |
54922901 |
T |
|
| Q |
256 |
atgatggtggttggggcggcaatgatcaggacaacagcgaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacag |
349 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
54922902 |
atcacggtggttggggcggcaatgaccaggacaacggcgaagacggtgcttgcgtcttttatgacggtgctagccaagagacgtgtacgcacag |
54922995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 299
Target Start/End: Original strand, 50236257 - 50236516
Alignment:
| Q |
47 |
aatggtggctttgaaagtaatttgacataaaaatgctctaatggtagtaaaaagagtagcctcccatggcggtgcctttccaaatgttctcgccgccgac |
146 |
Q |
| |
|
||||||||| ||||||||||| |||||| | || ||||||||||| |||||||||||| ||||||||| | |||||| |||| || |||| ||||| | |
|
|
| T |
50236257 |
aatggtggcattgaaagtaatctgacattacaacgctctaatggtggtaaaaagagtatcctcccatgccagtgcctccccaagtgctctctccgccaat |
50236356 |
T |
|
| Q |
147 |
ggcgacgccg-----gaactggtaaacatgttgaaacaagtcgcctgccagagacatattgttggtggtcattctgcagtggttggcaaca--tggcagc |
239 |
Q |
| |
|
| ||||| || |||| ||||||| | |||||||||||||| ||| | ||||| |||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
50236357 |
gtcgacgtcgagtcggaacaggtaaacgttttgaaacaagtcgcatgctacagacaaattgttggtggtgattctgcagtggttggcaacatgtggcagc |
50236456 |
T |
|
| Q |
240 |
aaccaattctggtgttatgatggtggttggggcggcaatgatcaggacaacagcgaagac |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||| |||| |
|
|
| T |
50236457 |
aaccaattctggtgttataatggtggtttgggcggcaatgaccaggacaacggcggagac |
50236516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 11442183 - 11441858
Alignment:
| Q |
18 |
caatggtggctttgaaagttcctaaaagaaatggtggctttgaaagtaatttgacataaaaatgctctaatggtagtaaaaagagtagcctcccatggcg |
117 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| |
|
|
| T |
11442183 |
caatggtgactttgaaagttcctaaaaaaaatggtggctttgaaagtaatttgacataaaaatgctctaatgg-agtaaaaagagtaaccaaccatggcg |
11442085 |
T |
|
| Q |
118 |
gtgcctttccaaatgttctcgccgccgacggcgacgccggaactggtaaacatgttgaaacaagtcgcctgccagagacatattgttggtggtcattctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11442084 |
gtgcctttccaaatgttctcgccgccgacggcgacgtcggaactggtaaacatgttgaaacaagtcgcctgccagagacatattgttggtggtgattctg |
11441985 |
T |
|
| Q |
218 |
cagtggttggcaac--atggcagcaaccaattctggtgttatgatggtggttggggcggcaatgatcaggacaacagcgaagacggtgcttgcggctttt |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
11441984 |
cagtggttggcaacctgtggcagcaaccaattctggtgttatgatggtggttggggcgacaatgatcaagacaacggcggagacggtgcttgcggctttt |
11441885 |
T |
|
| Q |
316 |
atgaaggtgctggcctagagacgtgta |
342 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
11441884 |
atgaaggtgctggccaagagacgtgta |
11441858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3640 times since January 2019
Visitors: 8709