View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4416_high_2 (Length: 569)
Name: NF4416_high_2
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_high_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 535
Target Start/End: Original strand, 22776457 - 22776976
Alignment:
| Q |
16 |
cctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataagccatagcataagagaaatgtatgttctgaacatgact |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22776457 |
cctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataagccatagcatacgagaaatgtatgttctgaacatgact |
22776556 |
T |
|
| Q |
116 |
ctcagaggagcttccaacataataaaattgagtatgatcatattttgaaagaactctaaccacattatcaaccataaatacagtatcatcatctcccatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22776557 |
ctcagaggagcttccaacataataaaattgagtatgatcatattttgaaagaactctaaccacattatcaaccataaacacagtatcatcatctcccatc |
22776656 |
T |
|
| Q |
216 |
atgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgatttgtatacttaa |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22776657 |
atgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgattcgtatacttaa |
22776756 |
T |
|
| Q |
316 |
atctactagtgtcccccgaaatttgaatatctggtaaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttcattagg |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22776757 |
atctactagtgtcccccgaaatttgaatatctggtaaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttcattatg |
22776856 |
T |
|
| Q |
416 |
tttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatttctgtgtcttgtctttga |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22776857 |
tttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatctctgtgtcttgtctttga |
22776956 |
T |
|
| Q |
516 |
gataaatcatcaatagacaa |
535 |
Q |
| |
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|||||||||||||||||||| |
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| T |
22776957 |
gataaatcatcaatagacaa |
22776976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 51 - 516
Target Start/End: Original strand, 40945106 - 40945571
Alignment:
| Q |
51 |
cttatagcaaatcctccaccaccataagccatagcataagagaaatgtatgttctgaacatgactctcagaggagcttccaacataataaaattgagtat |
150 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||||||||| || || |||||||||||||| || ||| |
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| T |
40945106 |
cttatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatgactctcagaagaactaccaacataataaaaatgtctat |
40945205 |
T |
|
| Q |
151 |
gatcatattttgaaagaactctaaccacattatcaaccataaatacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaa |
250 |
Q |
| |
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| ||||| |||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||| |
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| T |
40945206 |
ggtcatactttgaaagaattctaacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaa |
40945305 |
T |
|
| Q |
251 |
tgtctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgatttgtatacttaaatctactagtgtcccccgaaatttgaatatctggt |
350 |
Q |
| |
|
|||||||||||||| |||||| ||||| || || || || |||||||| |||||||||||| |||| || |||||| | || ||| ||||||| ||| |
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| T |
40945306 |
tgtctctgtcacaacccttgatatcctcaatgctgacctttgtccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggt |
40945405 |
T |
|
| Q |
351 |
aaatcttcatcatcacgtgtcttcactctttgatccatccacaccacccctcttgtttcattaggtttccaccataccttaatgtattcctttcttatgt |
450 |
Q |
| |
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|| |||| | |||| ||||||||||||| | ||| || || |||||||||| || ||| ||||||||| || |||||||| |||||| | | |
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| T |
40945406 |
aacccttcgttcctttgtgtactcactctttgatctaaccaaacaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtat |
40945505 |
T |
|
| Q |
451 |
tccacaaatttgatgaagccgctatcccaaaaacaatgtgtttgatttctgtgtcttgtctttgag |
516 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| | || || ||||||||||||| |
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| T |
40945506 |
tccataaatttgatgaagcagctatcccaaaaacaatgtgtttcagctcagtatcttgtctttgag |
40945571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 5180664 - 5180527
Alignment:
| Q |
16 |
cctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataagccatagcataagagaaatgtatgttctgaacatgact |
115 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||| |
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| T |
5180664 |
cctgcatatttgcaagctctttagccaaagggcagcttataacaaatcctccaccaccataagtcatagaataggagaaatgtatgttttgaacatgact |
5180565 |
T |
|
| Q |
116 |
ctcagaggagcttccaacataataaaattgagtatgat |
153 |
Q |
| |
|
|||||||||| |||| || || ||||||||| |||||| |
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|
| T |
5180564 |
ctcagaggagtttccgacgtagtaaaattgattatgat |
5180527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 11092122 - 11092000
Alignment:
| Q |
38 |
agccaaagggtagcttatagcaaatcctccaccaccataagccatagcataagagaaatgtatgttctgaacatgactctcagaggagcttccaacataa |
137 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||||||| |||||| |||| || ||||| | ||||||||| || || |||| ||| |
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| T |
11092122 |
agccaaaggataacttatagcaaatccaccaccaccataagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaa |
11092023 |
T |
|
| Q |
138 |
taaaattgagtatgatcatattt |
160 |
Q |
| |
|
||||||||| ||||||||||||| |
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| T |
11092022 |
taaaattgattatgatcatattt |
11092000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 41319822 - 41319944
Alignment:
| Q |
39 |
gccaaagggtagcttatagcaaatcctccaccaccataagccatagcataagagaaatgtatgttctgaacatgactctcagaggagcttccaacataat |
138 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| |||| || || || ||||| | |||||| ||||| | ||||||| |||| |
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| T |
41319822 |
gccaaaggatagcttatagcaaatccaccaccaccataagccataccataggaaaagaaaatattctgcaaatgactttcagataaacttccaatgtaat |
41319921 |
T |
|
| Q |
139 |
aaaattgagtatgatcatatttt |
161 |
Q |
| |
|
|||||||| ||||||| |||||| |
|
|
| T |
41319922 |
aaaattgattatgatcgtatttt |
41319944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 2619393 - 2619329
Alignment:
| Q |
54 |
atagcaaatcctccaccaccataagccatagcataagagaaatgtatgttctgaacatgactctc |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |||| ||| ||||| | ||||||||| |
|
|
| T |
2619393 |
atagcaaatccaccaccaccataagccataccataagaaaaatatatattctgcaaatgactctc |
2619329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 29613096 - 29613154
Alignment:
| Q |
38 |
agccaaagggtagcttatagcaaatcctccaccaccataagccatagcataagagaaat |
96 |
Q |
| |
|
||||||||| || || ||||||||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
29613096 |
agccaaaggataactaatagcaaatccaccaccaccataagccatattataagaaaaat |
29613154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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