View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_high_26 (Length: 226)
Name: NF4416_high_26
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 30897334 - 30897545
Alignment:
| Q |
1 |
tttttcggttcgtactacaaagccagagttgtttcacgcctccaaaatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggac |
100 |
Q |
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| T |
30897334 |
tttttcggttcgtactacaaagccagagttgtttcacgtctccaaaatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggac |
30897433 |
T |
|
| Q |
101 |
ctcttgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897434 |
ctcttgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttcca |
30897533 |
T |
|
| Q |
201 |
taatgatggttg |
212 |
Q |
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|||||||||||| |
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| T |
30897534 |
taatgatggttg |
30897545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 5963678 - 5963527
Alignment:
| Q |
46 |
aatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccac |
145 |
Q |
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||||||||||| |||||| ||||| || ||||||| || || |||||| ||| ||| |||||||| || ||||||||||||| |||||| ||| | |
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| T |
5963678 |
aatggacaatatttggttcgttacaaaaaccttttgcaagatgataagtctagacttctcttagagaccgttcatccatatgagcttcgtccattaccgc |
5963579 |
T |
|
| Q |
146 |
cacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgcttt |
197 |
Q |
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| T |
5963578 |
cacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttt |
5963527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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