View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_high_8 (Length: 452)
Name: NF4416_high_8
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 33 - 322
Target Start/End: Complemental strand, 45545829 - 45545540
Alignment:
| Q |
33 |
tctaacaaacactcaccaacaagctcagacttattcacgtaaggacccaactgatcaattgggacaaaattgaatttagtctctggaacaaaagcagctt |
132 |
Q |
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| T |
45545829 |
tctaacaaacactcaccaacaagctcagacttattcacataaggacccaactgatcaattgggacaaaattgaatttagtctctggaacaaaagcagctt |
45545730 |
T |
|
| Q |
133 |
cattggcaacctcttccacctcagaattctcattcaatgtcatttcataatcgtttgccacagttttgaaatttttgttagcaactttcaaagatccctt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45545729 |
cattggcaacctcttccacctcagaattctcattcaatgtcatttcataatcgtttaccacagttttgaaatttttgttagcaactttcaaagatccctt |
45545630 |
T |
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| Q |
233 |
tgaaatgtaatacacctttcccatagcaaatttgtcataaaacttccttgcagcatcattaaacatagttgcttgaatctgagtaccctg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45545629 |
tgaaatgtaatacacctttcccatagcaaatttgtcataaaacttccttgcagcatcattaaacatagttgcttgaatctgagtaccctg |
45545540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 45545457 - 45545420
Alignment:
| Q |
397 |
tcaaatatcctgttccttacatcttcatcggtcagttc |
434 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
45545457 |
tcaaatattctgttccttacatcttcatcagtcagttc |
45545420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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