View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_1 (Length: 1002)
Name: NF4416_low_1
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 701; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 127 - 987
Target Start/End: Original strand, 39955162 - 39956008
Alignment:
| Q |
127 |
tataccatttgtgatgaagtaatgatgttgatggaagagagagaaagttttagagaagagaataggactcagaagaatgatctgaagctgaaagacaaag |
226 |
Q |
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| T |
39955162 |
tataccatttgtgatgaagtaatgatgttgatggaagagagagaaagttttagagaagagaataggactcagaagaatgatctgaagctgaaagacaaag |
39955261 |
T |
|
| Q |
227 |
agaaaatagaggtaataagacagctgagttcaacaatagatatgctgaagcaggaaaatgtaagaatgagaagcttcatagctaaggaatctgccaagaa |
326 |
Q |
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| T |
39955262 |
agaaaatagaggtaataagacagctgagttcaacaatagatatgctgaagcaggaaaatgtaaaaatgagaagcttcatagctaaggaatctgccaagaa |
39955361 |
T |
|
| Q |
327 |
atggaagaccccatttgagttcaacaaacttattgagacattctcagggaaattgcttaaggggattccaaggaataagcctagtattgtagctctctag |
426 |
Q |
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| T |
39955362 |
atggaagaccccatttgagttcaacaaacttattgaaacattctcagggaaattgcttaaggggattccaaggaataagcctagtattgtagctctctag |
39955461 |
T |
|
| Q |
427 |
atatggtttaattagtttaaaatactatatagttctctaaacaatattataaagatgatatatacatatgtaatatgttagtgccttatgatagtagcct |
526 |
Q |
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| T |
39955462 |
atatggttcaattagtttaaaatactatatagttctctaaacaatattataaagatgatatatacatatgtaatatgttagtgccttatgatagtagcct |
39955561 |
T |
|
| Q |
527 |
agaaatcaataaaatatgttctgtcttccaatcctagtgtactttattacagaactaattaatattcttaacaatattccaaatgttacaattttattta |
626 |
Q |
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| T |
39955562 |
agaaatcaataaaatatgt------ttccaatcctagtgtactttattacagaactaattaatattcttaacaatattccaaatgttacaattttattta |
39955655 |
T |
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| Q |
627 |
attgtctaatactgtattcaacccaacgtgcccatctctccttttcatgcctaaaaagtttaatttcccctatatcttaatgtgaagtgcacaacaagca |
726 |
Q |
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|| | || | ||| | ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39955656 |
tttatttatt--tgtctaatacc---tgtattcatctctccttttcatgcctcaaaagtttaatttcccctatatcttaatgtgaagtgcacaacaagca |
39955750 |
T |
|
| Q |
727 |
gagtcattaaaagcttcttttctgccacagaggaaagcattcattgttcaattgattgctaaagccaacgatctttataaataaataggaagttgtcact |
826 |
Q |
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| T |
39955751 |
gagtcattaaaagcttcttttctgccacagaggaaagcattcattgttcaattgattgctaaagccaacgatctttataaataaataggaagttgtcact |
39955850 |
T |
|
| Q |
827 |
gcattgcaaacttctatggtatattccccactttaaagccatataaagagagatatcaaaagaatatacaattataatatactnnnnnnnngtaacatac |
926 |
Q |
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| T |
39955851 |
gcattgctaacttctatggtatattccccactttaaagccatataa--agagatatcaaaagaatatacaattataatatact-aaaaaaagtaacatac |
39955947 |
T |
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| Q |
927 |
actgaaaaataaagagccaagctttaaacacctcatgttttatatctcacagctctgcagt |
987 |
Q |
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|
| T |
39955948 |
actgaaaaataaagagccaaactttaaacacctcatgttttatatctcacagctctgcagt |
39956008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 39955049 - 39955101
Alignment:
| Q |
14 |
gagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagg |
66 |
Q |
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| T |
39955049 |
gagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagg |
39955101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 39954712 - 39954750
Alignment:
| Q |
28 |
cagaaagataccatttgcaatgaagtaatgaagttgagg |
66 |
Q |
| |
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| T |
39954712 |
cagaaagataccatttgtaatgacgtaatgaagttgagg |
39954750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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