View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_10 (Length: 445)
Name: NF4416_low_10
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 43187135 - 43187531
Alignment:
| Q |
18 |
ccttttaggcttttccatcacttccaaacccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctgga |
117 |
Q |
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| T |
43187135 |
ccttttaggcttttccatcacttccaaacccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctgga |
43187234 |
T |
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| Q |
118 |
tcaggctcttcaaaggatgaatttgacaatgaaactgatgaatttggttgctggaaattgatatttgatgaaccaggacacttattatcccatcttggtt |
217 |
Q |
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| T |
43187235 |
tcaggctcttcaaaggat---------------------gaatttggttgctggaaattgatatttgatgaaccaggacacttattatcccatcttggtt |
43187313 |
T |
|
| Q |
218 |
tctttgactttggtggtttctctgagataagcttgaaaccaaattcagtagaagaagaagaattctgagtagtaatgctgaagcaaggatcatattgatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43187314 |
tctttgactttggtggtttctctgagataagcttgaaaccaaattcagtagaagaagaagaattctgagcagtaatgctgaagcaaggatcatattgatc |
43187413 |
T |
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| Q |
318 |
aatattagtcctttttgtggaatgaaccttggaattatcaatgattttaccttgatctgaggaagctggagatactgtttcctgatctagttccttgaat |
417 |
Q |
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| T |
43187414 |
aatattagtcctttttgtggaatgaaccttggaattatcaatgattttaccttgatctgaggaagctggagatactgtttcctgatctagttccttgaat |
43187513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 5040867 - 5040933
Alignment:
| Q |
64 |
ctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaa |
130 |
Q |
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| T |
5040867 |
ctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaa |
5040933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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