View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_13 (Length: 369)
Name: NF4416_low_13
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 876465 - 876820
Alignment:
| Q |
7 |
gtgagatgaatgttttggtttagatgaaccaatcttttggtgaattcaagaattgaacgtaggtggctgtatacaggaactgtaactaaggctatgtgaa |
106 |
Q |
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| T |
876465 |
gtgacatgaatgttttggtttagatgaaccaatcttttggtgaattcaagaattgaacgtaggtggctgtatacaggaactgtaactaaggctatgtgaa |
876564 |
T |
|
| Q |
107 |
ttttggtctccattttttgttacttaatatttactttgttatgaaaatattgatgaatttataggaatcaataaaggagttatgtatgtattataactct |
206 |
Q |
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| T |
876565 |
ttttggtctccattttttgttacttaatatttactttgttatgaaaatattgatgaatttataggaatcaataaaggagttatgtatgtattataactct |
876664 |
T |
|
| Q |
207 |
cttttgnnnnnnnaattgaaactctcgttttttggtttgaaaccactaatacttcaattc---------attcatattcatatttattatttaacttcat |
297 |
Q |
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| T |
876665 |
cttttgtttttttaattgaaactctcgttttttggtttgaaaccactaatacttcaattcattcataaaattcatattcatatttattatttaacttcat |
876764 |
T |
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| Q |
298 |
aaacaaaattgaggcgtttcaatgtcaatagagttgaaacctctttgaatcaagat |
353 |
Q |
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| T |
876765 |
aaacaaaattgaggcgtttcaatatcaatagagttgaaacctctttgaatcaagat |
876820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 846015 - 846371
Alignment:
| Q |
7 |
gtgagatgaatgttttggtttagatgaaccaatcttttggtgaattcaagaattgaacgtaggtggctgtatacaggaactgtaactaaggctatgtgaa |
106 |
Q |
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| T |
846015 |
gtgacatgaatgttttggtttagatgaaccaatcttttggtgaattcaagaattgaacgtaggtggctgtatacaggaactgtaactaaggctatgtgag |
846114 |
T |
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| Q |
107 |
ttttggtctccattttttgttacttaatatttactttgttatgaaaatattgatgaatttataggaatcaataaaggagttatgtatgtattataactct |
206 |
Q |
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||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
846115 |
ttttggtctccattttttgttacttggtattttcattgttatgaaaatattgatgaatttataggaatcaataaaggagttatgtatgtattataactct |
846214 |
T |
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| Q |
207 |
cttttgnnnnnnnaat---tgaaactctcgttttttggtttgaaaccactaatacttcaattcattcat---------attcatatttattatttaactt |
294 |
Q |
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| T |
846215 |
cttttgtttttttaattgatgaaactctc-ctttttggtttgaaaccactaatacttcaattcattcataaaattaacattcatatttattatttaactt |
846313 |
T |
|
| Q |
295 |
cataaacaaaattgaggcgtttcaatgtcaatagagttgaaacctctttgaatcaaga |
352 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
846314 |
catgaacaaaattgaggcgtttcaatgtcaatagagttgaaacctctttgaatcaaga |
846371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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