View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4416_low_16 (Length: 321)

Name: NF4416_low_16
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4416_low_16
NF4416_low_16
[»] chr8 (7 HSPs)
chr8 (9-305)||(38529392-38529688)
chr8 (196-305)||(43408692-43408801)
chr8 (259-305)||(2111033-2111079)
chr8 (259-305)||(12524607-12524653)
chr8 (247-305)||(33583892-33583950)
chr8 (259-299)||(35764749-35764789)
chr8 (259-299)||(37740772-37740812)
[»] chr4 (9 HSPs)
chr4 (249-305)||(27611812-27611868)
chr4 (261-305)||(52327454-52327498)
chr4 (202-305)||(34812620-34812723)
chr4 (196-243)||(8130212-8130259)
chr4 (260-299)||(41758678-41758717)
chr4 (259-305)||(39276531-39276577)
chr4 (234-295)||(46765344-46765405)
chr4 (235-287)||(2103176-2103228)
chr4 (245-281)||(35933700-35933736)
[»] chr7 (1 HSPs)
chr7 (226-305)||(2525307-2525386)
[»] scaffold0010 (1 HSPs)
scaffold0010 (235-305)||(166757-166827)
[»] chr5 (4 HSPs)
chr5 (229-305)||(17902806-17902882)
chr5 (202-305)||(2942087-2942197)
chr5 (241-289)||(6462233-6462281)
chr5 (259-299)||(28363564-28363604)
[»] chr3 (3 HSPs)
chr3 (221-305)||(50882425-50882509)
chr3 (247-306)||(32326000-32326059)
chr3 (222-299)||(9198013-9198090)
[»] chr1 (10 HSPs)
chr1 (247-305)||(32348424-32348482)
chr1 (259-305)||(35058703-35058749)
chr1 (247-305)||(28870462-28870520)
chr1 (191-299)||(34619098-34619213)
chr1 (258-299)||(48817377-48817418)
chr1 (197-241)||(3408368-3408412)
chr1 (197-241)||(3438411-3438455)
chr1 (259-299)||(3949640-3949680)
chr1 (247-299)||(28870888-28870940)
chr1 (201-281)||(36021247-36021327)
[»] chr2 (3 HSPs)
chr2 (236-293)||(12238209-12238266)
chr2 (264-305)||(42139543-42139584)
chr2 (191-239)||(33625753-33625801)
[»] chr6 (2 HSPs)
chr6 (258-305)||(8014426-8014473)
chr6 (190-239)||(7316923-7316971)
[»] scaffold0022 (1 HSPs)
scaffold0022 (191-243)||(84628-84680)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 38529392 - 38529688
Alignment:
Q  9 aggagagaaagatggactgcaaattcaatgatcacatttgagcatacatacaaccacaacaaccaaagactttttccccaccgagatagaccggctacac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38529392 aggagagaaagatggactgcaaattcaatgatcacatttgagcatacatacaaccacaacaaccaaagactttttccccaccgagatagaccggctacac 38529491  T
Q  109 cggaaagacaaaacaatgtcttacaattaatttatcaatcatatcttaaaaatagaccatacaacccaaatctctcttaatggattaaggctctgtttgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38529492 cggaaagacaaaacaatgtcttacaattaatttatcaatcatatcttaaaaatagaccatacaacccaaatctctcttaatggattaaggctctgtttgg 38529591  T
Q  209 caaaaaatagcaaatagcttataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38529592 caaaaaatagcaaatagcttataagctagcttatatcagataagctggtggattgaatttgtagtgtttggtagaattagcaattgaactaccttat 38529688  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 43408801 - 43408692
Alignment:
Q  196 aggctctgtttggcaaaaaatagcaaatagcttataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttga 295  Q
    ||||||||||||| |||||||||  ||||||| |||| |||| ||||| | |||||||| |  ||||||||||||||||||||||| |||||| | ||||    
T  43408801 aggctctgtttggtaaaaaatagtgaatagctgataatctagtttatagcggataagctagccgattgaatttgtagtgtttggtaaaattagtaattga 43408702  T
Q  296 actaccttat 305  Q
    |||| |||||    
T  43408701 actagcttat 43408692  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 2111079 - 2111033
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||||| ||||||||||| ||||||| ||||||||| |||||    
T  2111079 gattgaatttgcagtgtttggtaaaattagcggttgaactagcttat 2111033  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 12524607 - 12524653
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||||||||||||||||| ||||||| |||||| || |||||    
T  12524607 gattgaatttgtagtgtttggtaaaattagccgttgaagtaacttat 12524653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 33583892 - 33583950
Alignment:
Q  247 gataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||| || |||||||||||||| |||||||| ||||| ||| ||||||| |||||    
T  33583892 gataagctagttgattgaatttgtagcgtttggtaaaattaacagctgaactagcttat 33583950  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 35764789 - 35764749
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    ||||||||||| ||||||||||| ||||||| |||||||||    
T  35764789 gattgaatttgcagtgtttggtaaaattagcggttgaacta 35764749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 37740812 - 37740772
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  37740812 gattgaatttgtagtgtttgatacaattagctgttgaacta 37740772  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 27611812 - 27611868
Alignment:
Q  249 taagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  27611812 taagctagttgattgaatttgtagtgtttggtaaaattagcagttgaactaacttat 27611868  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 52327498 - 52327454
Alignment:
Q  261 ttgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||    
T  52327498 ttgaatttgtagtgtttggtaaaattagcagttgaactagcttat 52327454  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 34812620 - 34812723
Alignment:
Q  202 tgtttggcaaaaaatagcaaatagcttataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactacc 301  Q
    ||||||| |||||||||  ||||||| |||||||| |||||| | |||||||| |  ||||||||||| ||||||| ||| |||| |  ||||||||| |    
T  34812620 tgtttggtaaaaaatagtgaatagctgataagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagc 34812719  T
Q  302 ttat 305  Q
    ||||    
T  34812720 ttat 34812723  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 8130212 - 8130259
Alignment:
Q  196 aggctctgtttggcaaaaaatagcaaatagcttataagctagcttata 243  Q
    ||||||||||||| ||||||||||| ||| ||||||||||| ||||||    
T  8130212 aggctctgtttggtaaaaaatagcagataacttataagctaacttata 8130259  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 41758717 - 41758678
Alignment:
Q  260 attgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  41758717 attgaatttgtagtgttcggtaaaattagcagttgaacta 41758678  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 39276577 - 39276531
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||||||||||||||||| ||||||  ||||||||| |||||    
T  39276577 gattgaatttgtagtgtttggtaaaattagtggttgaactagcttat 39276531  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 46765344 - 46765405
Alignment:
Q  234 ctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttga 295  Q
    |||||||||| |||||||  | || |||||||||||||||||||| || |||||||| ||||    
T  46765344 ctagcttataacagataaattcgttgattgaatttgtagtgtttgctaaaattagcacttga 46765405  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 2103176 - 2103228
Alignment:
Q  235 tagcttataccagataagctggtggattgaatttgtagtgtttggtagaatta 287  Q
    ||||||||| |||||||||| |   |||||||||||||||||||||| |||||    
T  2103176 tagcttatagcagataagctagcttattgaatttgtagtgtttggtaaaatta 2103228  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 35933736 - 35933700
Alignment:
Q  245 cagataagctggtggattgaatttgtagtgtttggta 281  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  35933736 cagataagctagtgaattgaatttgtagtgtttggta 35933700  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 2525386 - 2525307
Alignment:
Q  226 cttataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||| ||||||||| | |||||||| |  ||||||||||||| ||||||||| ||||||||| ||||||| |||||    
T  2525386 cttataagttagcttatagcggataagctagctgattgaatttgtattgtttggtaaaattagcagctgaactagcttat 2525307  T

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Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 166827 - 166757
Alignment:
Q  235 tagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||| || ||||||| |  ||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  166827 tagcttatagcaaataagctagctgattgaatttgtagtgtttggtaaaattagcggttgaactagcttat 166757  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 17902882 - 17902806
Alignment:
Q  229 ataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||||||||||   ||||| || || |||| |||||||||||||||||| || |||||||||||||| |||||    
T  17902882 ataagctagcttatagaggataaactagttgattaaatttgtagtgtttggtaaaactagcagttgaactagcttat 17902806  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 2942197 - 2942087
Alignment:
Q  202 tgtttggcaaaaaatagcaaatagcttataagctagctt-------ataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttg 294  Q
    ||||||| |||||||||||||| ||| ||||||||||||       ||| | |||||||| || | |||||||||||| |||||||| ||||||  ||||    
T  2942197 tgtttggtaaaaaatagcaaattgctgataagctagcttatagctgatagcggataagctagttggttgaatttgtagggtttggtaaaattagtggttg 2942098  T
Q  295 aactaccttat 305  Q
    ||||| |||||    
T  2942097 aactaacttat 2942087  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 6462233 - 6462281
Alignment:
Q  241 ataccagataagctggtggattgaatttgtagtgtttggtagaattagc 289  Q
    |||||||||||||| |  ||||||||||||||||||| ||| |||||||    
T  6462233 ataccagataagctagctgattgaatttgtagtgtttagtaaaattagc 6462281  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 28363604 - 28363564
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    |||||||||||||||||||||||  |||||| |||||||||    
T  28363604 gattgaatttgtagtgtttggtaatattagctgttgaacta 28363564  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 50882509 - 50882425
Alignment:
Q  221 aatagcttataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||||||||||||||||||  | ||| ||| || |||| ||||||||||| |||||| ||||||| | ||||||| |||||    
T  50882509 aatagcttataagctagcttatagtacataggctagttgatttaatttgtagtgattggtaaaattagcggctgaactagcttat 50882425  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 32326000 - 32326059
Alignment:
Q  247 gataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttatt 306  Q
    |||||||| || ||| ||||||||||||||||||| |||||| |||||||||| ||||||    
T  32326000 gataagctagttgatggaatttgtagtgtttggtaaaattagtagttgaactagcttatt 32326059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 9198013 - 9198090
Alignment:
Q  222 atagcttataagctagcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    |||||| |||||||| |||||| | |||||| | || |||||||| |||||||||||||| ||||||  |||||||||    
T  9198013 atagctgataagctaacttatagcggataagttagttgattgaatctgtagtgtttggtaaaattagttgttgaacta 9198090  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 32348482 - 32348424
Alignment:
Q  247 gataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||| || ||||||||||||||||||||||| ||||||| ||||| ||| |||||    
T  32348482 gataagctagttgattgaatttgtagtgtttggtaaaattagcggttgagctagcttat 32348424  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 35058749 - 35058703
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||    
T  35058749 gattaaatttgtagtgtttggtaaaattagcggttgaactaccttat 35058703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 28870462 - 28870520
Alignment:
Q  247 gataagctggtggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||| ||  ||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  28870462 gataagctagtttattgaatttttagtgtttggtaaaattaacagttgaactagcttat 28870520  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 34619098 - 34619213
Alignment:
Q  191 gattaaggctctgtttggcaaaaaatagcaaatagcttataagctagcttataccagata-------agctggtggattgaatttgtagtgtttggtaga 283  Q
    ||||| |||| ||||||| |||| ||| | ||||||| ||||||||||||| |  |||||       |||| || |||||||||||||| |||||||| |    
T  34619098 gattatggctttgtttggtaaaacataacgaatagctgataagctagcttagagtagatagcaaattagctagttgattgaatttgtagggtttggtaaa 34619197  T
Q  284 attagcagttgaacta 299  Q
    |||| |||||||||||    
T  34619198 attaacagttgaacta 34619213  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 48817418 - 48817377
Alignment:
Q  258 ggattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    |||||||||||||||||||  ||| |||||||||||||||||    
T  48817418 ggattgaatttgtagtgttatgtaaaattagcagttgaacta 48817377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 3408368 - 3408412
Alignment:
Q  197 ggctctgtttggcaaaaaatagcaaatagcttataagctagctta 241  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||    
T  3408368 ggctctgtttggtaaaaaatagcggatagctgataagctagctta 3408412  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 3438455 - 3438411
Alignment:
Q  197 ggctctgtttggcaaaaaatagcaaatagcttataagctagctta 241  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||    
T  3438455 ggctctgtttggtaaaaaatagcggatagctgataagctagctta 3438411  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 3949640 - 3949680
Alignment:
Q  259 gattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  3949640 gattgaatttgtagtgtttggtaaaattagcgtttgaacta 3949680  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 28870940 - 28870888
Alignment:
Q  247 gataagctggtggattgaatttgtagtgtttggtagaattagcagttgaacta 299  Q
    |||||||| ||| ||||| |||||||||||||||| |||||||  ||||||||    
T  28870940 gataagctagtgaattgattttgtagtgtttggtaaaattagctattgaacta 28870888  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 36021327 - 36021247
Alignment:
Q  201 ctgtttggcaaaaaatagcaaatagcttataagctagcttataccagataagctggtggattgaatttgtagtgtttggta 281  Q
    ||||||| ||||||||||  ||||||||||||| |||||||||  |||||| |  |  | |||||||||||||||| ||||    
T  36021327 ctgtttgacaaaaaatagagaatagcttataaggtagcttataatagataaaccagctggttgaatttgtagtgttcggta 36021247  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 12238209 - 12238266
Alignment:
Q  236 agcttataccagataagctggtggattgaatttgtagtgtttggtagaattagcagtt 293  Q
    |||||||| ||||||||||  | ||||||||||||||||||| ||| |||||||||||    
T  12238209 agcttataacagataagctaattgattgaatttgtagtgttttgtaaaattagcagtt 12238266  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 42139584 - 42139543
Alignment:
Q  264 aatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  42139584 aatttgtagtgtttggtaaaattagcagttgaactagcttat 42139543  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 33625801 - 33625753
Alignment:
Q  191 gattaaggctctgtttggcaaaaaatagcaaatagcttataagctagct 239  Q
    ||||| ||||||||||||||||||||| | ||||||| | |||||||||    
T  33625801 gattacggctctgtttggcaaaaaataccgaatagctgacaagctagct 33625753  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 8014426 - 8014473
Alignment:
Q  258 ggattgaatttgtagtgtttggtagaattagcagttgaactaccttat 305  Q
    ||||||||||| |||||||||||| |||||||||| |||||| |||||    
T  8014426 ggattgaatttatagtgtttggtaaaattagcagtcgaactagcttat 8014473  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 7316923 - 7316971
Alignment:
Q  190 ggattaaggctctgtttggcaaaaaatagcaaatagcttataagctagct 239  Q
    |||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  7316923 ggattaaggctctgtttgg-taaaaatagcggatagcttataagctagct 7316971  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 84628 - 84680
Alignment:
Q  191 gattaaggctctgtttggcaaaaaatagcaaatagcttataagctagcttata 243  Q
    ||||||||||| |||||| |||||||||| ||||| | ||||| |||||||||    
T  84628 gattaaggctccgtttggtaaaaaatagcgaatagttgataagttagcttata 84680  T

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