View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_18 (Length: 285)
Name: NF4416_low_18
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 54816571 - 54816303
Alignment:
| Q |
1 |
gtatgatgtgagcaaactgcgcaagactccacaaagtgatactccacctgagcaagaaggtcctgaagacaccaaaggaatttggtggttcaaatccctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54816571 |
gtatgatgtgagcaaactgcgcaagactccacaaagtgatactccacctgagcaagaaggtcctgaagacaccaaaggaatttggtggttcaaatccctg |
54816472 |
T |
|
| Q |
101 |
tttggaaaataaataaacaaacaagtatggttatgaacagtgttatgtaatcacctctgaagtagtgtttatttcatgtcattaataaaggtctttggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54816471 |
tttggaaaataaataaacaaacaagtatggttatgaacagtgttatgtaatcacctctgaagtagtgtttatttcatgtcatgaataaaggtctttggaa |
54816372 |
T |
|
| Q |
201 |
ctctaatcagatcaatttagtttggatttctatatatatcatcatgaatttgcttgttttgtacatata |
269 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54816371 |
ctctaatcagatcaatttagttttgatttctatatatatcatcatgtatttgcttgttttgtacatata |
54816303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 54819558 - 54819503
Alignment:
| Q |
2 |
tatgatgtgagcaaactgcgcaagactccacaaagtgatactccacctgagcaaga |
57 |
Q |
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||||||||||| ||| ||| |||||||||||| |||||| ||||||||||| |||| |
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| T |
54819558 |
tatgatgtgagtaaattgcacaagactccacagagtgatcctccacctgagtaaga |
54819503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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