View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_19 (Length: 285)
Name: NF4416_low_19
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 36360728 - 36360455
Alignment:
| Q |
1 |
tcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgcttgcagtagctacttccaagaggttccacttattactacatacgttga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
36360728 |
tcctaagacatttcctcctctcattcactatcgtcatcatttcatttgttgcttgcaatagcaacttgcaagaggacccacttattactacatacgttga |
36360629 |
T |
|
| Q |
101 |
tgattcaccttcctacgatgatagtgatacattattattcaagaacatgatagagcaaaacacaaatgatgttttgtgcttagaccaatttggtgtctct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360628 |
tgattcaccttcctacgatgatagtgatacattattattcaagaacatgatagagcaaaacacaaatgatgttttgtgcttagaccaatttggtgtctct |
36360529 |
T |
|
| Q |
201 |
tcacgttcacttaaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggt |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360528 |
tcacgttcacttaaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggt |
36360455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36349362 - 36349259
Alignment:
| Q |
1 |
tcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgcttgcagtagctacttccaagaggttccacttattactacatacgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36349362 |
tcctaagacatttcctcctctcatccactatcgtcatcatttcatttgctgcttgcagtagctacttccaagagtttccacttattactacatacgttga |
36349263 |
T |
|
| Q |
101 |
tgat |
104 |
Q |
| |
|
|||| |
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|
| T |
36349262 |
tgat |
36349259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 36349196 - 36349122
Alignment:
| Q |
200 |
ttcacgttcacttaaaattgttaatgttagagattatggagctaaaggggatggtcatacggatgacacacaggt |
274 |
Q |
| |
|
|||| |||||||| ||||| ||||||| || |||||||||||||||||||||||| | || |||||||||||||| |
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|
| T |
36349196 |
ttcaagttcacttcaaatttttaatgtcagtgattatggagctaaaggggatggtaaaactgatgacacacaggt |
36349122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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