View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_23 (Length: 250)
Name: NF4416_low_23
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13446205 - 13445967
Alignment:
| Q |
1 |
cctgcgaccttgtaggccctaaatcacaatgtacaaataaatggaaggttgtttctgattgattcacacacaccgaatacaatcttcggtcatatcctgc |
100 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13446205 |
cctgtgaccttgtaggccctaaatcacaatgtagaaataaatggaaggttgtttctgattgattcacacac--cgaatacaatcttcggtcatatcctgc |
13446108 |
T |
|
| Q |
101 |
aaaatgactccacaatgagctagagtacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgagacatctata |
200 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
13446107 |
aaaatgactccacgatgagctagagcacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgaaacatccata |
13446008 |
T |
|
| Q |
201 |
tctctagactacacatattgacttcaggtcagtatattctt |
241 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
13446007 |
tctctagactacccatattgacttcaggtcagtatattctt |
13445967 |
T |
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