View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416_low_3 (Length: 561)
Name: NF4416_low_3
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 2 - 547
Target Start/End: Original strand, 36360625 - 36361172
Alignment:
| Q |
2 |
atcatcaacgtatgtagtattacgtgggtcctgttgcaagttgctattgcaagcaacaaatgaaatgatgacgatagtgaatgagaggaggaaatgtctt |
101 |
Q |
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| T |
36360625 |
atcatcaacgtatgtagtaataagtgggtcctcttgcaagttgctattgcaagcaacaaatgaaatgatgacgatagtgaatgagaggaggaaatgtctt |
36360724 |
T |
|
| Q |
102 |
aggagggccattatagttaatttcttccctttgtattat---actatattgagaaatatatatagatgtactttgaaaggtgaagaataataattgtttg |
198 |
Q |
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| T |
36360725 |
aggagggccattatagttaatttcttccctttgtattattatactatattgagaaatatatatagatgtactttgaaaggtgaagaataataattgtttg |
36360824 |
T |
|
| Q |
199 |
atgagaatatatatatttagcaaaagctatgtatcgaggtatggaacttaggannnnnnntgattgtgtatttatagacaaggaaattaaaaagagcatg |
298 |
Q |
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| T |
36360825 |
atgagaatatatatatttagcaaaagctatgtatcgaggtatggaacttaggagggggg-tgattgtgtatttatagacaaggaaattaaaaagagcatg |
36360923 |
T |
|
| Q |
299 |
tttgcttttcatatttaattatatcccacatatggttatatatcggtatggaagtttagttaggtataagagattgagacgaaatgcccaaagtccctat |
398 |
Q |
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| T |
36360924 |
tttgcttttcatatttaaatatatcccacatatggttatatatcggtatggaagtttagttaggtataagagattgagacgaaatgcccaaagtctctat |
36361023 |
T |
|
| Q |
399 |
accactcttcattttcctccatacaacgtttgctccataaatgggatttatttatgtgatttttgtgtgcgtgcatcaactttataggctcttaaaggaa |
498 |
Q |
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| T |
36361024 |
accacacttccttttcctccatacaacgtttgctccataaatgggatttatttatgtgatttatttgtgcgtgcatcaactttataggctcttaaaggaa |
36361123 |
T |
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| Q |
499 |
gaacatagtcacaataataatttttgaaaataatattatgacttaattg |
547 |
Q |
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| T |
36361124 |
gaatatagtcacaaaaataatttttgaaaataatattaagacttaattg |
36361172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36349258 - 36349390
Alignment:
| Q |
1 |
catcatcaacgtatgtagtattacgtgggtcctgttgcaagttgctattgcaagcaacaaatgaaatgatgacgatagtgaatgagaggaggaaatgtct |
100 |
Q |
| |
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|||||||||||||||||||| || |||| || ||| |||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36349258 |
catcatcaacgtatgtagtaataagtggaaactcttggaagtagctactgcaagcagcaaatgaaatgatgacgatagtggatgagaggaggaaatgtct |
36349357 |
T |
|
| Q |
101 |
taggagggccattatagttaatttcttcccttt |
133 |
Q |
| |
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|||||| |||||||||||||||||| ||||||| |
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|
| T |
36349358 |
taggagagccattatagttaatttcctcccttt |
36349390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 36349459 - 36349511
Alignment:
| Q |
337 |
tatatcggtatggaagtttagttaggtataagagattgagacgaaatgcccaa |
389 |
Q |
| |
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||||| ||||||||||| ||||| | ||||||||||| ||| ||||||||||| |
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| T |
36349459 |
tatatgggtatggaagtatagtttgatataagagattcagaggaaatgcccaa |
36349511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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