View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-1 (Length: 891)
Name: NF4418-Insertion-1
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 10982590 - 10983075
Alignment:
| Q |
8 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
107 |
Q |
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| T |
10982590 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcaaattaa |
10982689 |
T |
|
| Q |
108 |
ggaattaatggactccgataaagggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttccctt |
207 |
Q |
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| T |
10982690 |
ggaattaatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttccctt |
10982789 |
T |
|
| Q |
208 |
gtcgctttgaataagttggctaagttgtggaagcagaattagaagtaacataatataacttttttatatgatatgggttttgttggcccttatcataagt |
307 |
Q |
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| T |
10982790 |
gtcgctttgaataagttggctcagttgtggaagcagaattagaagtaacataatataac-tttttatatgatatgggttttgttggcccttatcataagt |
10982888 |
T |
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| Q |
308 |
tgttttgttgtctcataaaataaaatttatgaataaaatggtgttgaaattgtgattcggataaattgggctcctttaatttatttgtttttgtaataaa |
407 |
Q |
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| T |
10982889 |
tgttttgttgtctcataaaataaaatttatgaataaaatggtggtgaaattgtgattcggataaattgggctcctttaatttatttgtttttgtaataaa |
10982988 |
T |
|
| Q |
408 |
taggtggtttaattcataaatatttgcacaattatccttttctacacaaattattttaaaagtgctcagcgatactatttctttatg |
494 |
Q |
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| T |
10982989 |
taggtggtttaattcataaatatttgcacaattatccttttccatacaaattattttaaaagtgctcagcgatactatttctttatg |
10983075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 10968640 - 10968877
Alignment:
| Q |
8 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
107 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968640 |
tgaacaaggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
10968739 |
T |
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| Q |
108 |
ggaattaatggactccgataaagggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttccctt |
207 |
Q |
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| T |
10968740 |
ggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcactt |
10968839 |
T |
|
| Q |
208 |
gtcgctttgaataagttggctaagttgtggaagcagaa |
245 |
Q |
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| T |
10968840 |
gttgctttgaataatctggcacagttgtggaagcagaa |
10968877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 11002820 - 11003010
Alignment:
| Q |
8 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
107 |
Q |
| |
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||||||| |||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||||| || |||| |
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| T |
11002820 |
tgaacaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaa |
11002919 |
T |
|
| Q |
108 |
ggaattaatggactccgataaagggaaagagattagacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtgga |
198 |
Q |
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||| || ||||| || || |||||||||||||||||| | | ||||| |||||||||| ||||||||| ||| ||| || || ||||||| |
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| T |
11002920 |
ggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtgga |
11003010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 11079996 - 11080177
Alignment:
| Q |
43 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
142 |
Q |
| |
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||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
143 |
gacaaattattttcaagatgaaaataagtgctaaagagacaagagaagaaggtggaagttcccttgtcgctttgaataagtt |
224 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaaagtt |
11080177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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