View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-2 (Length: 691)
Name: NF4418-Insertion-2
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-2 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 691
Target Start/End: Complemental strand, 11225799 - 11225128
Alignment:
| Q |
8 |
agaaagatatcaagtcactaaaccatgacataaagtatgatcgatgacattgagaaaacnnnnnnngcataattttgatgaagcagaatgagcataacct |
107 |
Q |
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| T |
11225799 |
agaaagatatcaagtcactaaaccatgacataaagtatgat----gacattgagcaaacaaaaaaaacataattttgatgaagcagaatgagcataatct |
11225704 |
T |
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| Q |
108 |
tt-ccttttatatatgttaaacataatgagcagaatgagttttaaaaaaccataactgattgttaaacaaaattctagatacaactcatttatttacaat |
206 |
Q |
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| T |
11225703 |
tttccttttatatatgttaaacataatgagc-------gtttaaaaaaaccataactgattgttaaacaaaattctacatacaactcatt-atttacaat |
11225612 |
T |
|
| Q |
207 |
cagtttgtagaatgagcagttaaacaatcaacttacaatcagaaatacatcaagcaatcagttcgcataattttgattttacaatcaattctcagaattt |
306 |
Q |
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| T |
11225611 |
cagtttgtagaatgagcagttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattt |
11225512 |
T |
|
| Q |
307 |
tgtcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtataattacagctatatttttcaatcagtttgcataa |
406 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |
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| T |
11225511 |
tgtcaagaatgcgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtatacttacagctatatttttcaatcaacttgcagaa |
11225412 |
T |
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| Q |
407 |
tccttttcaattaaataatcagcttacattcaggtacacattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaa |
506 |
Q |
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| T |
11225411 |
tccttttgaattaaataatcagcttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaa |
11225312 |
T |
|
| Q |
507 |
tgtgcagcacttatagtacatgcataacatttaatcaaccaacacacccaaaagtatatttacagctatctttttccatcagttttcataatccttttca |
606 |
Q |
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| T |
11225311 |
tgtgcaacacttatagtacatgcataacatttaatcaatcaacacacccaaaagtatatttacagctatctttttccatcagtttgcagaatccttttca |
11225212 |
T |
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| Q |
607 |
attaaacaaccaacttacattcaggtgcacatcaaacatcagttcgcagaattttatcaacaatgtgtaactcttatactacatg |
691 |
Q |
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| T |
11225211 |
attaaacaaccaacttacattcaggtacacatcaaacattagttcgcagaa-tttatcaacaatgtgtaactcttatactacatg |
11225128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 309 - 575
Target Start/End: Complemental strand, 11225156 - 11224891
Alignment:
| Q |
309 |
tcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtataattacagctatatttttcaatcagtttgcataatc |
408 |
Q |
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| T |
11225156 |
tcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcagaatc |
11225057 |
T |
|
| Q |
409 |
cttttcaattaaataatcagcttacattcaggtacacattaaacaatcagttcacagaattttgattttacaatcagtttccagaattttatcaacaatg |
508 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||||||||||| || ||||||||||||||| |||||||| |||||| || ||||||||| |
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| T |
11225056 |
tttttcaattaaacaatcagcttacaatcaggtaaacattaaacaatcaatt-tcagaattttgattttgtaatcagttcgcagaatatt-tcaacaatg |
11224959 |
T |
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| Q |
509 |
tgcagcacttatagtacatgcataacatttaatcaac-caacacacccaaaagtatatttacagctat |
575 |
Q |
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|| | | |||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| |||| |
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| T |
11224958 |
tgtaactcttatactacatgcacaacatttaatcaacttaacacacccaaaagtatacttacaactat |
11224891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 226 - 384
Target Start/End: Complemental strand, 11225048 - 11224891
Alignment:
| Q |
226 |
ttaaacaatcaacttacaatcagaaatacatcaagcaatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacac |
325 |
Q |
| |
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||||||||||| ||||||||||| | |||| || |||||| || || |||||||||||| ||||| ||| |||||| || ||||||||||||||| | |
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| T |
11225048 |
ttaaacaatcagcttacaatcaggtaaacattaaacaatcaatt-tcagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactc |
11224951 |
T |
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| Q |
326 |
ttgtactacatgcacaacatttaatcaac-caacacacccaaaagtataattacagctat |
384 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |
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| T |
11224950 |
ttatactacatgcacaacatttaatcaacttaacacacccaaaagtatacttacaactat |
11224891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 632
Target Start/End: Complemental strand, 11225160 - 11225024
Alignment:
| Q |
496 |
tttatcaacaatgtgcagcacttatagtacatgcataacatttaatcaaccaacacacccaaaagtatatttacagctatctttttccatcagttttcat |
595 |
Q |
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||||||||||||||| | | |||||| |||||| | ||||| |||||||||||||| || |||||||| ||||| | ||||||||| || | ||| || |
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| T |
11225160 |
tttatcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttcaattaatttgcag |
11225061 |
T |
|
| Q |
596 |
aatccttttcaattaaacaaccaacttacattcaggt |
632 |
Q |
| |
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|||| ||||||||||||||| || |||||| |||||| |
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| T |
11225060 |
aatctttttcaattaaacaatcagcttacaatcaggt |
11225024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 644 - 691
Target Start/End: Complemental strand, 11224985 - 11224939
Alignment:
| Q |
644 |
atcagttcgcagaattttatcaacaatgtgtaactcttatactacatg |
691 |
Q |
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| T |
11224985 |
atcagttcgcagaatatt-tcaacaatgtgtaactcttatactacatg |
11224939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 3072298 - 3072165
Alignment:
| Q |
111 |
cttttatatatgttaaacataatgagcagaatgagttttaaaaaaccataactgattgttaaacaaaattctagatacaactcatttatttacaatcagt |
210 |
Q |
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||||||||||||||||| | |||| ||| |||||| || |||| || |||||| ||||||||||||||||||| | | |||||||||| |||||| | |
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|
| T |
3072298 |
cttttatatatgttaaaaagaatgggcaaaatgagattaaaaagactataactaattgttaaacaaaattctataaattgttcatttatttgcaatcaat |
3072199 |
T |
|
| Q |
211 |
ttgtagaatgagcagttaaacaatcaacttacaa |
244 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
3072198 |
ttgtagaatgtgcagttaaacaatcaacttacaa |
3072165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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