View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418-Insertion-3 (Length: 649)

Name: NF4418-Insertion-3
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418-Insertion-3
NF4418-Insertion-3
[»] scaffold0576 (2 HSPs)
scaffold0576 (312-620)||(1602-1909)
scaffold0576 (193-314)||(1086-1207)
[»] chr6 (6 HSPs)
chr6 (312-620)||(15356612-15356919)
chr6 (193-314)||(15356096-15356217)
chr6 (555-620)||(28705310-28705375)
chr6 (555-620)||(26908180-26908245)
chr6 (192-253)||(13070205-13070266)
chr6 (193-252)||(26909625-26909684)
[»] chr8 (3 HSPs)
chr8 (312-620)||(3731159-3731466)
chr8 (192-314)||(3730642-3730764)
chr8 (191-253)||(28156891-28156953)
[»] chr7 (4 HSPs)
chr7 (312-620)||(2754628-2754936)
chr7 (192-314)||(2755331-2755453)
chr7 (555-620)||(23067563-23067628)
chr7 (192-252)||(23068778-23068839)
[»] chr1 (3 HSPs)
chr1 (312-620)||(20261543-20261855)
chr1 (187-314)||(20261024-20261151)
chr1 (192-242)||(10979575-10979625)
[»] chr2 (3 HSPs)
chr2 (312-620)||(28655362-28655686)
chr2 (192-314)||(28654848-28654970)
chr2 (192-252)||(25808576-25808636)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-191)||(480697-480880)
[»] chr5 (1 HSPs)
chr5 (192-252)||(20745868-20745928)
[»] scaffold0011 (1 HSPs)
scaffold0011 (194-252)||(135223-135281)


Alignment Details
Target: scaffold0576 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 312 - 620
Target Start/End: Original strand, 1602 - 1909
Alignment:
Q  312 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgctctctgtctccctctccctc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1602 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgctctctctctctctctccctc 1701  T
Q  412 gttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttgtttttgatttc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  1702 gttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttcttttt-attttgatttc 1800  T
Q  512 tcaatcagcttttcagtgttggtggtgcactgatagtagtttgttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgtaa 611  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1801 tcaatcagcttttcagtgtcggtggtgcactgatagtagtttgttttaaagaaattgttttcaattttatgatatatttatgtatattagtgtgatgtaa 1900  T
Q  612 tttgattag 620  Q
    |||||||||    
T  1901 tttgattag 1909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 1086 - 1207
Alignment:
Q  193 actacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 292  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1086 actacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 1185  T
Q  293 cgggcgctaatataggttgaca 314  Q
    ||||||||||||||||||||||    
T  1186 cgggcgctaatataggttgaca 1207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 312 - 620
Target Start/End: Original strand, 15356612 - 15356919
Alignment:
Q  312 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgctctctgtctccctctccctc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  15356612 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgctctctctctctctctccctc 15356711  T
Q  412 gttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttgtttttgatttc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  15356712 gttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttcttttt-attttgatttc 15356810  T
Q  512 tcaatcagcttttcagtgttggtggtgcactgatagtagtttgttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgtaa 611  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15356811 tcaatcagcttttcagtgtcggtggtgcactgatagtagtttgttttaaagaaattgttttcaattttatgatatatttatgtatattagtgtgatgtaa 15356910  T
Q  612 tttgattag 620  Q
    |||||||||    
T  15356911 tttgattag 15356919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 15356096 - 15356217
Alignment:
Q  193 actacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 292  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15356096 actacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 15356195  T
Q  293 cgggcgctaatataggttgaca 314  Q
    ||||||||||||||||||||||    
T  15356196 cgggcgctaatataggttgaca 15356217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 28705375 - 28705310
Alignment:
Q  555 ttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgtaatttgattag 620  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  28705375 tttttaagaaattgttttcaattttatgatatatttttgtatattagtgtgatgtaatttggttag 28705310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 26908245 - 26908180
Alignment:
Q  555 ttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgtaatttgattag 620  Q
    |||| |||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  26908245 tttttaagatattattttcaattttatgatatatttttgtatattagtgtgatgtaatttggttag 26908180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 13070266 - 13070205
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctat 253  Q
    |||||| |||||||||| |||| |||||||  ||||||||||||||||| ||||| ||||||    
T  13070266 cactacgccaattttgaaatttagtagcgctaatttaatagcacttttagagaaaatgctat 13070205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 26909684 - 26909625
Alignment:
Q  193 actacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 252  Q
    ||||| ||||||||||||||| |||||||  | ||||||||||||||| | |||||||||    
T  26909684 actacgccaattttgacatttagtagcgctcagttaatagcacttttagaaaaagtgcta 26909625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 312 - 620
Target Start/End: Original strand, 3731159 - 3731466
Alignment:
Q  312 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgctctctgtctccctctccctc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  3731159 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgctctctctctctctctccctc 3731258  T
Q  412 gttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttgtttttgatttc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3731259 gttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttcttttt-attttgatttc 3731357  T
Q  512 tcaatcagcttttcagtgttggtggtgcactgatagtagtttgttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgtaa 611  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3731358 tcaatcagcttttcagtgtcggtggtgcactgatagtagttttttttaaagaaattgttttcaattttatgatatatttatgtatattagtgtgatgtaa 3731457  T
Q  612 tttgattag 620  Q
    |||||||||    
T  3731458 tttgattag 3731466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 3730642 - 3730764
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 291  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3730642 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 3730741  T
Q  292 gcgggcgctaatataggttgaca 314  Q
    |||||||||||||||||||||||    
T  3730742 gcgggcgctaatataggttgaca 3730764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 28156891 - 28156953
Alignment:
Q  191 gcactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctat 253  Q
    ||||||| |||||||||| |||| |||||||  ||||||||||||||||| ||||| ||||||    
T  28156891 gcactacgccaattttgagatttagtagcgctaatttaatagcacttttagagaaaatgctat 28156953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 312 - 620
Target Start/End: Complemental strand, 2754936 - 2754628
Alignment:
Q  312 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgctctctgtctccctctc--cc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||  ||    
T  2754936 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgctctctctctctctctctccc 2754837  T
Q  410 tcgttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttgtttttgatt 509  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2754836 tcgttgaactctaattgaatcaattgattgaaaccccc-atctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttatttt-gatt 2754739  T
Q  510 tctcaatcagcttttcagtgttggtggtgcactgatagtagtttgttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgt 609  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2754738 tctcaatcagcttttcagtgtcggtggtgcactgatagtagtttgttttaaagaaattgttttcaattttatgatatatttatgtatattagtgtgatgt 2754639  T
Q  610 aatttgattag 620  Q
    |||||||||||    
T  2754638 aatttgattag 2754628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 2755453 - 2755331
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 291  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755453 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 2755354  T
Q  292 gcgggcgctaatataggttgaca 314  Q
    |||||||||||||||||||||||    
T  2755353 gcgggcgctaatataggttgaca 2755331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 620
Target Start/End: Complemental strand, 23067628 - 23067563
Alignment:
Q  555 ttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgatgtaatttgattag 620  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  23067628 tttttaagaaattgttttcaattttatgatatatttttgtatattagtgtgatgtaatttggttag 23067563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 23068839 - 23068778
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcactttta-aagaaagtgcta 252  Q
    |||||| ||||||||||||||| ||| |||| ||||||||||||||||| || |||||||||    
T  23068839 cactacgccaattttgacatttagtaacgcccatttaatagcacttttagaaaaaagtgcta 23068778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 312 - 620
Target Start/End: Original strand, 20261543 - 20261855
Alignment:
Q  312 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgctctctgtctccctct----c 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||    |    
T  20261543 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatctctcacctaacccatcatttgaacgctctctctctctctctctctc 20261642  T
Q  408 cctcgttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttgtttttga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20261643 cctcgttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttctttttgtttttga 20261742  T
Q  508 tttctcaatcagcttttcagtgttggtggtgcactgatagtagtttgttttaaagaaattgtttccaattttatgatatatttatgtatattagtgtgat 607  Q
    |||||||||| |||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20261743 tttctcaatctgcttttcagtttcggtggtgcactgatagtagttttttttaaagaaattgttttcaattttatgatatatttatgtatattagtgtgat 20261842  T
Q  608 gtaatttgattag 620  Q
    |||||||||||||    
T  20261843 gtaatttgattag 20261855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 20261024 - 20261151
Alignment:
Q  187 agatgcactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagt 286  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  20261024 agattcactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagttgactctcgtacaaataatagcagt 20261123  T
Q  287 ttggcgcgggcgctaatataggttgaca 314  Q
    ||||||||||||||||||||||||||||    
T  20261124 ttggcgcgggcgctaatataggttgaca 20261151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 10979575 - 10979625
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaa 242  Q
    |||||| |||||||| ||||||  ||||||||||||||||||| |||||||    
T  10979575 cactacgccaattttaacatttattagcgcctatttaatagcatttttaaa 10979625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 312 - 620
Target Start/End: Original strand, 28655362 - 28655686
Alignment:
Q  312 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgctctctgtctccctct----- 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||         
T  28655362 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatctctcacctaacccatcatttgaacgctctctctctctctctctctc 28655461  T
Q  407 -----------ccctcgttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttct 495  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28655462 tctctctctctccctcgttgaactctaattgaatcaattgattgaaaccccccatctttcagaaatcaattgaaccctaatttggtaagtattagtttct 28655561  T
Q  496 ttttgtttttgatttctcaatcagcttttcagtgttggtggtgcactgatagtagtttgttttaaagaaattgtttccaattttatgatatatttatgta 595  Q
    |||||||||||||||||||||  |||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  28655562 ttttgtttttgatttctcaatttgcttttcagtttcggtggtgcactgatagtagttttttttaaagaaattgttttcaattttatgatatatttatgta 28655661  T
Q  596 tattagtgtgatgtaatttgattag 620  Q
    |||||||||||||||||||||||||    
T  28655662 tattagtgtgatgtaatttgattag 28655686  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 28654848 - 28654970
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 291  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  28654848 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagttgactctcgtacaaataatagcagtttggc 28654947  T
Q  292 gcgggcgctaatataggttgaca 314  Q
    |||||||||||||||||||||||    
T  28654948 gcgggcgctaatataggttgaca 28654970  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 25808576 - 25808636
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 252  Q
    |||||| ||||||||||||||| |||||||| |||||||| |||||||| | |||||||||    
T  25808576 cactacgccaattttgacatttagtagcgcccatttaataacacttttagaaaaagtgcta 25808636  T

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Target: scaffold0002 (Bit Score: 164; Significance: 3e-87; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 480697 - 480880
Alignment:
Q  8 atgatttctttcatccttttcatggtttttgatgatcaataatttatttcatttccatgtacaagattgatgaagttgcattgtaatttaattccaagtt 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  480697 atgatttctttcatccttttcatggtttttgatgatctataatttatttcatttccatgtacaagatcgatgaagttgcattgtaatttaattccaagat 480796  T
Q  108 gtgaaatgattatgaataccgcattgatgattaataataattttgttgtggacaccataatatgctggagtgttttgttagatg 191  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  480797 gtgaaatgattatgactaccgcattgatgattaataataattttgttgtggacactataatatgctggagtgttttgttagatg 480880  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 20745868 - 20745928
Alignment:
Q  192 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 252  Q
    |||||| ||||||||||||||| ||||| |  ||||||||||||||||| | |||||||||    
T  20745868 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 20745928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 135223 - 135281
Alignment:
Q  194 ctacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 252  Q
    |||| |||||||| ||||||  ||||||| ||||||||||||||||| | |||||||||    
T  135223 ctacgccaattttaacatttaatagcgcccatttaatagcacttttagaaaaagtgcta 135281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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