View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-4 (Length: 614)
Name: NF4418-Insertion-4
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-4 |
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| [»] chr7 (7 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Complemental strand, 7310589 - 7309982
Alignment:
| Q |
8 |
tgtttctctatctagatgaaattattgaaagaaccatagaatttaaatgtttattagtatcttatttgttaatattggtacaatgtatcttagttgtggc |
107 |
Q |
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| T |
7310589 |
tgtttctctatctagatgaaattattgaaagaaccatagaatttaaatgtttattagtatcttatttgttaatattggtacaatgtatcttagttgtggc |
7310490 |
T |
|
| Q |
108 |
agtcctggagtttgtctagatattgaaagaaccattaatttctttgannnnnnnctcgcggttttcagaaattctgcaactttatttcttttctttctta |
207 |
Q |
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| T |
7310489 |
agtcctggagtttgtctagatattgaaagaaccatggatttctttgatttttttctcgcggttttcagaaattctgcaattttatttcttttctttctta |
7310390 |
T |
|
| Q |
208 |
aattgctattttcttgatttgaattgcttatgaaataatttgtgcatctggtatgatcttctgagttagaatctgtttgtttaggatgtattgacactta |
307 |
Q |
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|||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7310389 |
aattgctattttgttgatgtgaattgttgctgaaataatttgtgcatctggtatgatcttctgagttagaatctgtttgtttaggatgtattgacactta |
7310290 |
T |
|
| Q |
308 |
tctctaaaagttttgctttagtagcgacaat-gcgatgcacagcaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtca |
406 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7310289 |
tctcgaaaagttttgctttagttgcgacaatagcgatgcacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtca |
7310190 |
T |
|
| Q |
407 |
tgttactaatgcatctgaaaatgaattagaagagtttcggaaacttgagaatggggaaaactctattatcaaattccatctttcccaagttaattacctc |
506 |
Q |
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| T |
7310189 |
tgttactgatgcatctgaaaatgaattagaagaacttcggaaacttgagaaaggggaaaactttattatcaaattccatctttcccaagttaattacttc |
7310090 |
T |
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| Q |
507 |
ctttgtacagatctgattgttccaagtactacattttgtaacttgtgggcaggctataatcttgagaataatgaaacacttcacatgatttactgtgttt |
606 |
Q |
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| T |
7310089 |
ctttgttcagatctgattgttccaagcactacattttgtaacttgttggcaggctataatcttgagaataatgaaacacttcacatgatttactgtgttt |
7309990 |
T |
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| Q |
607 |
ctgtccta |
614 |
Q |
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|||||||| |
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| T |
7309989 |
ctgtccta |
7309982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 263 - 474
Target Start/End: Original strand, 7329643 - 7329857
Alignment:
| Q |
263 |
atcttctgagttagaatctgtttgtttaggatgtattgacacttatctctaaaagttttgctttagtagcgacaat-gcgatg---cacagcaatattct |
358 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| || ||| |||| ||||||||| |
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| T |
7329643 |
atcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaatagcaatgcaacacaacaatattct |
7329742 |
T |
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| Q |
359 |
ataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaacttgagaat |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | | || || |||||||||||||| |
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| T |
7329743 |
ataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgaactttggaaacttgagaat |
7329841 |
T |
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| Q |
459 |
ggggaaaactctatta |
474 |
Q |
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| T |
7329842 |
gaggaaaactctatta |
7329857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 7300897 - 7300843
Alignment:
| Q |
375 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatg |
429 |
Q |
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| T |
7300897 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaaatg |
7300843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 7329553 - 7329607
Alignment:
| Q |
8 |
tgtttctctatctagatgaaattattgaaagaaccatagaatttaaatgtttatt |
62 |
Q |
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| T |
7329553 |
tgtttctctatctagatgaaattattgaaagaaccatagattttaattgtttatt |
7329607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 13898963 - 13899003
Alignment:
| Q |
389 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
429 |
Q |
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| T |
13898963 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
13899003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 13569143 - 13569182
Alignment:
| Q |
389 |
agttctgatttagggtcatgttactaatgcatctgaaaat |
428 |
Q |
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| T |
13569143 |
agttctgatttagggtcaagttactaatgcatatgaaaat |
13569182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 600
Target Start/End: Original strand, 7329932 - 7329973
Alignment:
| Q |
559 |
gctataatcttgagaataatgaaacacttcacatgatttact |
600 |
Q |
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| T |
7329932 |
gctataaacttgagaatgatgaaacacttcacatcatttact |
7329973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 24552799 - 24552759
Alignment:
| Q |
389 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
429 |
Q |
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| T |
24552799 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
24552759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 21335 - 21401
Alignment:
| Q |
10 |
tttctctatctagatgaaattattgaaagaaccatagaatttaaatgtttattagtatcttatttgtt |
77 |
Q |
| |
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| T |
21335 |
tttctctatctagttgaaattattgaaagaatcaaag-atttaatcgtttaccagtatcttatttgtt |
21401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6333 - 6394
Alignment:
| Q |
10 |
tttctctatctagatgaaattattgaaagaaccatagaatttaaatgtttattagtatcttat |
72 |
Q |
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| T |
6333 |
tttctctatctagttgaaattattaaaagaatcaaag-atttaattgtttatcagtatcttat |
6394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 23964003 - 23964039
Alignment:
| Q |
389 |
agttctgatttagggtcatgttactaatgcatctgaa |
425 |
Q |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
23964003 |
agttctgatttaggctcaagttactaatgcatctgaa |
23964039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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