View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-6 (Length: 508)
Name: NF4418-Insertion-6
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Complemental strand, 10032867 - 10032367
Alignment:
| Q |
8 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032867 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
10032768 |
T |
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| Q |
108 |
aactacataatccaatatcctcaatagttttaacgcgactatattctcaggtatgaattcaaacccaagacttctagttaagcaggaagagattcaaatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032767 |
aactacataatccaatatcctcaatagttttaacgcgactatattctcaggtatgaattcaaacccaagacttctagttaagcaggaagagattcaaatc |
10032668 |
T |
|
| Q |
208 |
atctcattaaagtgctctttggtgagttgatagnnnnnnngacaaatagaaagaggcatatacataagggcatgccgctaaaagaaagaaaaggtttgcg |
307 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10032667 |
atctcattaaagtgctctttggtgagttggtagtttttttgacaaatagaaagaggcatatacataagggcatgccgctaaaagaaagaaaaggtttgcg |
10032568 |
T |
|
| Q |
308 |
gaataaccacagctgcaattgcgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccctggttgacaagaattgca |
407 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
10032567 |
gaataaccacagctgcaaatgcgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccgtggttgacaagaaatgca |
10032468 |
T |
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| Q |
408 |
aaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatgtttgctgcatagcaaggttcttcc |
507 |
Q |
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| T |
10032467 |
aaattgaaatggtgttaatagcaacaagaagacactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttcc |
10032368 |
T |
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| Q |
508 |
a |
508 |
Q |
| |
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| T |
10032367 |
a |
10032367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Complemental strand, 10054779 - 10054279
Alignment:
| Q |
8 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054779 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
10054680 |
T |
|
| Q |
108 |
aactacataatccaatatcctcaatagttttaacgcgactatattctcaggtatgaattcaaacccaagacttctagttaagcaggaagagattcaaatc |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054679 |
aactacataatccaatatcctcattagttttaacgcgactatattctcaggtatgaattcaaacccaagacttctagttaagcaggaagagattcaaatc |
10054580 |
T |
|
| Q |
208 |
atctcattaaagtgctctttggtgagttgatagnnnnnnngacaaatagaaagaggcatatacataagggcatgccgctaaaagaaagaaaaggtttgcg |
307 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054579 |
atctcattaaagtgctctttggtgagttggtagtttttttgacaaatagaaaggggcatatacataagggcatgccgctaaaagaaagaaaaggtttgcg |
10054480 |
T |
|
| Q |
308 |
gaataaccacagctgcaattgcgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccctggttgacaagaattgca |
407 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10054479 |
gaataaccacagctgcaattgtgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccctggttgacaagaaatgca |
10054380 |
T |
|
| Q |
408 |
aaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatgtttgctgcatagcaaggttcttcc |
507 |
Q |
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| T |
10054379 |
aaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttcc |
10054280 |
T |
|
| Q |
508 |
a |
508 |
Q |
| |
|
| |
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|
| T |
10054279 |
a |
10054279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 365 - 508
Target Start/End: Complemental strand, 10064511 - 10064368
Alignment:
| Q |
365 |
tatataatagcaagacttccatccctggttgacaagaattgcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtc |
464 |
Q |
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|||||| | ||||| ||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10064511 |
tatatacttgcaaggctttcatccctgattgaccagaatagcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtc |
10064412 |
T |
|
| Q |
465 |
atatttttcagaagcgatgtttgctgcatagcaaggttcttcca |
508 |
Q |
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|||||| ||||||| |||| |||||||| |||||||||||||| |
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| T |
10064411 |
atatttgtcagaagggatggctgctgcatggcaaggttcttcca |
10064368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 10064726 - 10064617
Alignment:
| Q |
8 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
107 |
Q |
| |
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||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
10064726 |
aaacatgtttccaattccttgagatacaaaatatagatatattcaagatgctaactacggcaaaatcaaagtcatt-------attcaggcttgtatatt |
10064634 |
T |
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| Q |
108 |
aactacataatccaata |
124 |
Q |
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||||||||| ||||||| |
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| T |
10064633 |
aactacatagtccaata |
10064617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 10075195 - 10075110
Alignment:
| Q |
399 |
agaattgcaaaa-ttgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatg |
483 |
Q |
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|||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||| |||| |
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| T |
10075195 |
agaattgcaaaaattgaaatggcgttaatagcgacaagaagaaactcacgtcagatacagaagagacatatttttcagaagagatg |
10075110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 56203177 - 56203129
Alignment:
| Q |
435 |
gaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatg |
483 |
Q |
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|||||||||||| | ||||| |||||||||||||||||||||| |||| |
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| T |
56203177 |
gaagaaactcacttcagatactgaagagtcatatttttcagaagggatg |
56203129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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