View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-7 (Length: 483)
Name: NF4418-Insertion-7
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 78 - 483
Target Start/End: Original strand, 42826822 - 42827227
Alignment:
| Q |
78 |
tagtttccatcaaaaagggtcaaagttattacctttaacagggtcaatgtgtgaaatatcaagttgatcaaattcaatctcactctcagaatcttcactc |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42826822 |
tagtttccatcaaaaagggtcaaagttattacctttaataggatcaatttgtgaaatatcaagttgatcaaattcaatctcactctcagaatcttcactc |
42826921 |
T |
|
| Q |
178 |
ttgttcaaattgaaccaaaagggtgttttggcagacaagcaaaaacggtcaccaagttccaaatgacccatttcgaatttcttgaagatcttaagcgttt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42826922 |
ttgttcaaattgaaccaaaagggtgttttggcagacaagcaaaaacggtcaccaagttccaaatgacccatttcgaatttcttgaagatcttaagcgttt |
42827021 |
T |
|
| Q |
278 |
tgtcattgttcttcaaaatccagatggggtttcttccaatgacttgaaatgaaaccttaggaggttctgaatcagactcgttgttgagttggaacgaaac |
377 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42827022 |
tgtcattgttcttcaaaacccagatggggtttcttccaatgacttgaaatgaaaccttaggaggttctgaatcagactcgttgttgagttggaacgaaac |
42827121 |
T |
|
| Q |
378 |
gtgacggcgagaaacagtgtggtcttttgtgttgagaccacaacctcgtccgaacagtgctttgtcgctgctttgtaaagagaatttggaaccatcttcg |
477 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42827122 |
gtgacggcgagaaacagtgtggtcttttgtgttgaaaccacaacctcgtccgaacagtgctttgtcgctgctttgtaaagagaatttggaaccatcttcg |
42827221 |
T |
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| Q |
478 |
ccttcg |
483 |
Q |
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|||||| |
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| T |
42827222 |
ccttcg |
42827227 |
T |
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