View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418-Insertion-9 (Length: 123)
Name: NF4418-Insertion-9
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 50965428 - 50965544
Alignment:
| Q |
7 |
acctatcggggagcattataaccagaatggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagtt |
106 |
Q |
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| T |
50965428 |
acctatcggggagccttataaccagaatggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagtt |
50965527 |
T |
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| Q |
107 |
atccctccattgcacac |
123 |
Q |
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| T |
50965528 |
atccctccattgcacac |
50965544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 50981623 - 50981731
Alignment:
| Q |
14 |
ggggagcattataaccagaatggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctc |
113 |
Q |
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|||||||||||||||||||| |||||| ||| ||||| |||||||| |||||||||||||| || | || || |||||||||| ||| ||| | |||| |
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| T |
50981623 |
ggggagcattataaccagaa-ggaacagcaaaaacatcactatcaagtgacatattaacgcctttctgaacattcctaacaaaagcactggttgtgcctc |
50981721 |
T |
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| Q |
114 |
cattgcacac |
123 |
Q |
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| T |
50981722 |
cattacacac |
50981731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 13636685 - 13636577
Alignment:
| Q |
14 |
ggggagcattataaccagaatggaacaataaacacatcgctatcaagagacatattaacgcccttttcgacttttctaacaaaagtactagttatccctc |
113 |
Q |
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|||||||||||||||||||| |||||| ||| ||||| |||||||| | ||||| || | ||| || ||||| |||||||||||||||||| | |||| |
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| T |
13636685 |
ggggagcattataaccagaa-ggaacatcaaaaacatcactatcaagtggcatatcaatggtcttctcaactttcctaacaaaagtactagttctgcctc |
13636587 |
T |
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| Q |
114 |
cattgcacac |
123 |
Q |
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|||| ||||| |
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| T |
13636586 |
cattacacac |
13636577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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