View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_1 (Length: 738)
Name: NF4418_high_1
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 334 - 582
Target Start/End: Original strand, 27666491 - 27666749
Alignment:
| Q |
334 |
attcgaattcaagctctaaaaatgtaacaaagtcaaaaccctaacaaaaatatgaaaattgctctttagcatctataatagtttgcttccgcatcttaaa |
433 |
Q |
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| T |
27666491 |
attcgaattcaagctctaaaaatgtaacaaagtcaaaaccctaacaaaaatatgaaaattgctctttagcatctataatagtttgcttccgcatcttaaa |
27666590 |
T |
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| Q |
434 |
ctaccaaaaacatcttaacgacaattaaaaaccaccatcaggaacagtagttaactgcagttcaaatttagcaaaatgttaataattt----------cc |
523 |
Q |
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| T |
27666591 |
ctaccaaaaacatcttatcgacaattaaaaaccaccatcaggaacagtagttaactgcagttcaaatttagcaaaatgttaataatttcccttcataacc |
27666690 |
T |
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| Q |
524 |
cttcagaacgacaatgcataaacgaatctataaaactgagaatccacctaagcagtagt |
582 |
Q |
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| T |
27666691 |
cttcagaacgacaatgcaaaaaagaatctataaaactgagaatccacctaagcagtagt |
27666749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 27666281 - 27666491
Alignment:
| Q |
14 |
ttctcaaaagagtaagccataacttggagtgaatagagctgttgtaactcgattctttttaagggtgttctaactagatttgtaggtctacattaagctc |
113 |
Q |
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| T |
27666281 |
ttctcaaaagagtaagccataacttggagtgaatagagctgttgtaactcgattctttttaagggtgttctaactagatttgtaggtctacattaagctc |
27666380 |
T |
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| Q |
114 |
ttttcatattgtactcaactactgtatctgaaatgaaatcattttaatgaattcatgctacgctaggatagaaatgattaaaattcgaattctttagcat |
213 |
Q |
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| T |
27666381 |
ttttcatattgta-------actgtatctgaaatgaaatcattttaatgaattcatgctacgctaggatagaaatgattaaaattcgaattctttagcat |
27666473 |
T |
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| Q |
214 |
tgtttcttatatataaga |
231 |
Q |
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| T |
27666474 |
tgtttcttatatataaga |
27666491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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