View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_14 (Length: 468)
Name: NF4418_high_14
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 33129352 - 33129512
Alignment:
| Q |
18 |
aaggatttcatatatattcttaaaaaattgaaataagtcacatatataaaatactccctcaaagaaaaacattaatgcttattaattttattattgtggc |
117 |
Q |
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| T |
33129352 |
aaggatttcatatatattcttaaaaaattgaaataagtcacatatataaaatactccctcaaagaaaaacattaatgcttattgattttattattgtggc |
33129451 |
T |
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| Q |
118 |
aagtgtgcagacgtctgtccattttttgagaagaaaaacaatttagaaaatatccaagacg |
178 |
Q |
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| T |
33129452 |
aagtgtgcagacgtctgtccattttttgagaagaaaaacaatttagaaaatatccaagacg |
33129512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 33129576 - 33129673
Alignment:
| Q |
237 |
ggctataccaatttatttttaggaagctataccaacatttggaatcaacttgaaatatagtcatag--atatttattaaggaaaaagttttgttattg |
332 |
Q |
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| T |
33129576 |
ggctataccaatttatttttaggaagctataccaaaatttggtatcaacttgaaatatagtcatagatatatttattaaggaaaaagttttgttattg |
33129673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 33129734 - 33129800
Alignment:
| Q |
393 |
gttttaccaaaactcgagatcttattatattgaatatagtttgtatacatcgtcagtatagaattat |
459 |
Q |
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| T |
33129734 |
gttttaccaaaactcgagatcttattatatagaatgtaatttgtatacatcgtcagtatacaattat |
33129800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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