View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_high_15 (Length: 443)
Name: NF4418_high_15
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 38321939 - 38322235
Alignment:
| Q |
1 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcacgatggtaatctacgtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38321939 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcgcgatggtaatctacgtaat |
38322038 |
T |
|
| Q |
101 |
ttaagtgtaaatacatatgattgtactgttttgataactagttttcactttaattattaaccttttcaattatgatatgtagttggagaagatgacgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38322039 |
ttaagtgtaaatacatatgattgtattgttttggtaactagttgtcactttaattattaaccttttcaattatgatatgtagttggagaagacgacgatg |
38322138 |
T |
|
| Q |
201 |
actttgaagaaataatgaatgaaactgatagtgatgactaaatggagcaagcatctaatggttttgattttgaagtcaaacgccgatggtgatgatg |
297 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38322139 |
actttgaagaaataatgaatgaaactgacagtgatgactaaatggagcaagcatctaatggttttgattttgaagtcaaacgccggtggtgatgatg |
38322235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 38301197 - 38301397
Alignment:
| Q |
1 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcacgatggtaatctacgtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||||| | |||||||||| |||||| ||||||||||| | |||||||| || | ||| |
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|
| T |
38301197 |
taacaagtataaagatcgtatgttgccgatgaatgtggaaactagaatgtgtactcgcacctggttgcacaattttgttaataatggtaatttatggaat |
38301296 |
T |
|
| Q |
101 |
ttaagtgtaaatacatatgattgtactgttttgataactagttttcactttaattattaaccttttcaattatgatatgtagttggagaagatgacgatg |
200 |
Q |
| |
|
|| | |||||||| |||||||| || || ||||||||| | | |||| || |||||| ||||| |||||||||||||||||| |||||||||||| |||| |
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|
| T |
38301297 |
ttgaatgtaaatagatatgattttattggtttgataaccactgttcaattgaattataaacctcttcaattatgatatgtagatggagaagatgatgatg |
38301396 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
38301397 |
a |
38301397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 38314441 - 38314667
Alignment:
| Q |
2 |
aacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcacgatggtaatctacgtaatt |
101 |
Q |
| |
|
||||||||||||||||| |||||||| ||| || |||| ||||| |||| ||||||| |||| |||||||||||||| |||||||||||| ||||| |
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|
| T |
38314441 |
aacaagtataaagatcgcatgttaccaatggatgtggaaactagaatttgcactcgcagttggctgtacaattttgttagtgatggtaatctatctaatt |
38314540 |
T |
|
| Q |
102 |
taagtgtaaatacatatgattgtactgttttgataacta-gttttcactttaattattaaccttttcaattatgatatgtagttggagaa---gatgacg |
197 |
Q |
| |
|
||| ||| |||| | || | |||| |||||||||||| | | | |||| ||||||| || ||| |||||||||||||| ||||||| || |||| |
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|
| T |
38314541 |
taaatgtgaatataaataagtgtattgttttgataaccacctgggtaatttagttattaatctcttcgattatgatatgtagatggagaagacgacgacg |
38314640 |
T |
|
| Q |
198 |
atgactttgaagaaataatgaatgaaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38314641 |
atgactttgaagaaataatgaatgaaa |
38314667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 38309839 - 38310026
Alignment:
| Q |
1 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcacgatggtaatctacgtaat |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || | ||| |||| ||||| | |||||||||| ||||||| ||||||||||| | |||||||| || ||||| |
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|
| T |
38309839 |
taacaaatataaagatcgtatgttgccaaataatgtggaaactagaatatgtactcgcacttggttgcacaattttgttggcaatggtaatttatgtaat |
38309938 |
T |
|
| Q |
101 |
ttaagtgtaaatacatatgattgtactgttttgataactagttttcactttaattattaaccttttcaattatgatatgtagttggag |
188 |
Q |
| |
|
|| | |||||||| |||||||| | |||||||||| | | | |||| ||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
38309939 |
ttgaatgtaaatatatatgatttaattgttttgatagccactgttcaatttaattattatcctcctcaattatgatatgtagatggag |
38310026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38307097 - 38307329
Alignment:
| Q |
1 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcacgatggtaatctacgtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| ||||| ||||| |||||| |||| |||||||||| ||| ||||||||||| ||||| |
|
|
| T |
38307097 |
taacaagtataaagatcgtatgttgccgatggatgtggaaactagaatttgtgctcgcagttggctgtacaatttcgttagtgatggtaatctgtgtaat |
38307196 |
T |
|
| Q |
101 |
ttaagtgtaaatacatatgattgtactgttttgataactagttttcactttaattattaaccttttcaattatgatatgtagttgg---agaagatgacg |
197 |
Q |
| |
|
|| | ||| |||||||| | |||||||||||| | | ||| || ||| ||||||| |||||||||||| ||||| ||| ||| ||||| | |
|
|
| T |
38307197 |
ttgaatgt------atatgattctgttgttttgataaccactggtcaattacattgttaacctcttcaattatgatttgtagatggaaaagacgatgaag |
38307290 |
T |
|
| Q |
198 |
atgactttgaagaaataatgaatgaaactgatagtgatg |
236 |
Q |
| |
|
| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
38307291 |
acgactttgaagaaataatgaatgaaattgatggtgatg |
38307329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 38317850 - 38318107
Alignment:
| Q |
1 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaattttgttcacgatggtaatctac---gt |
97 |
Q |
| |
|
|||||||||| ||||||||| | | || | |||| |||| ||||| | |||||||||| |||||| ||||||||||| |||||||||||||| || |
|
|
| T |
38317850 |
taacaagtatgaagatcgtacgctgcccacgaatgtggaaactagaatctgtactcgcagttggttatacaattttgtaagcgatggtaatctactatgt |
38317949 |
T |
|
| Q |
98 |
aatttaagtgtaaatacatatgattgtactgttttgataactagttttcactttaattattaaccttttcaattatgatatgtagttggagaagatgac- |
196 |
Q |
| |
|
||||| |||||||| ||||||||||| | || ||||||| ||| ||| ||| ||||||||||| ||||||| |||||||||| |||||| ||| |
|
|
| T |
38317950 |
tctttaaatgtaaataaatatgattgtattcttctgataaccagtggtcaattttattattaacctcttcaattgtgatatgtagacagagaaggcgaca |
38318049 |
T |
|
| Q |
197 |
--gatgactttgaagaaataatgaatgaaactgatagtgatgactaaatggagcaagc |
252 |
Q |
| |
|
|||||||| || | |||||||||||||| ||||| || ||| |||||| |||||| |
|
|
| T |
38318050 |
gagatgacttggatggaataatgaatgaaattgataatggtgaaaaaatggtgcaagc |
38318107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 38322307 - 38322369
Alignment:
| Q |
369 |
aactatatagagttgttaggttatggtttgttgacttaccggtggattatatatttttgtgat |
431 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38322307 |
aactatataaagttgttaggttatggtttgttgacttaccggtggattttatatgtttgtgat |
38322369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 38326805 - 38326908
Alignment:
| Q |
149 |
tttaattattaaccttttcaattatgatatgtagttggagaagatgac---gatgactttgaagaaataatgaatgaaactgatagtgatgactaaatgg |
245 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || ||| |||||| |||||||||||||||| ||||| |||| ||| | ||||| |||||| |
|
|
| T |
38326805 |
tttaattattaacctcttcaattttgatatgtagatgaagaggatgacgatgatgactttgaagaaactatgaacgaaattgacggcgatgaaaaaatgg |
38326904 |
T |
|
| Q |
246 |
agca |
249 |
Q |
| |
|
|||| |
|
|
| T |
38326905 |
agca |
38326908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 38849312 - 38849199
Alignment:
| Q |
165 |
ttcaattatgatatgtagttggagaaga---tgacgatgactttgaagaaataatgaatgaaactgatagtgatgactaaatggagcaagcatctaatgg |
261 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||| ||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
38849312 |
ttcaattatgatatgtagatggagaagacgatgacgacgactttgaagaaataaagaatgaaattgataatgatgaaaaaatggagcaagcttctaatga |
38849213 |
T |
|
| Q |
262 |
ttttgattttgaag |
275 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
38849212 |
ctttggttttgaag |
38849199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38849486 - 38849411
Alignment:
| Q |
1 |
taacaagtataaagatcgtatgttaccgatgaatttggatgctagattttgtactcgcaattggttgtacaatttt |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
38849486 |
taacaagtataaagatcgtatgttgccgatgaatgtggaagctagaatttgtactcgcagttggttgtacaatttt |
38849411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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