View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_high_21 (Length: 332)
Name: NF4418_high_21
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4418_high_21 |
| |
|
[»] chr3 (10 HSPs) |
| |
|
[»] scaffold0013 (1 HSPs) |
| | |
|
[»] chr4 (12 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 10877455 - 10877777
Alignment:
Q |
10 |
ataatactcgtaacagttgagatggatcaaatcatgaagtagatgatgattatagtgaacttcaatattttgagattctaatttcgattgattttgttgt |
109 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
10877455 |
ataatactcgtaacagttgagatggatcaaatcatgaagtagatgatgattatagtgaacttcaatattttgagattctaatttcgattgattttgttgt |
10877554 |
T |
|
Q |
110 |
ttcacacttcgtaattttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatctcaatcttggtttggactcacactcat |
209 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
10877555 |
ttcacacttcgtaattttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatctcaatcttggtttggactcacactcat |
10877654 |
T |
|
Q |
210 |
cgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac |
309 |
Q |
|
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
10877655 |
catattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac |
10877754 |
T |
|
Q |
310 |
atacaaggtgctcggctcactga |
332 |
Q |
|
|
|| |||||||||||||||||||| |
|
|
T |
10877755 |
atgcaaggtgctcggctcactga |
10877777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 43445505 - 43445612
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||| ||||| ||||||||| ||| |||||||||| ||||||| || ||||||||||| || |||||| |||||||||||||||| || |||||||| |
|
|
T |
43445505 |
tattatagatgatttacatagaaataaaaatacaacgttgatgcccgttcttagggaacaaaatatgtgttcagattttatggctaacaaattatcacat |
43445604 |
T |
|
Q |
312 |
acaaggtg |
319 |
Q |
|
|
|||||||| |
|
|
T |
43445605 |
acaaggtg |
43445612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 53590085 - 53589987
Alignment:
Q |
234 |
aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactga |
332 |
Q |
|
|
|||||||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| |
|
|
T |
53590085 |
aatgaaaatacaacattggtgcatgttttaagggaacaaaatatgtgtgcagattttatggctaaggagagatcacatgcaatgtgctcttctcactga |
53589987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 7320263 - 7320148
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
|||||||| |||||||||| | |||| |||||||| |||| |||||| |||||| |||| || |||||||||||||||||||||||| ||| ||| ||| |
|
|
T |
7320263 |
tattagagttgctttacatggaaatggaaatacaatattggtgcatgctcttagg-aacaaaatatgtgtgcagattttatggctaagaaaggatctcat |
7320165 |
T |
|
Q |
312 |
acaaggtgctcggctca |
328 |
Q |
|
|
||||||| || ||||| |
|
|
T |
7320164 |
gcaaggtgatctgctca |
7320148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 17508781 - 17508872
Alignment:
Q |
240 |
aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactg |
331 |
Q |
|
|
|||||||||||| ||||||| ||||||||||| || |||| |||| ||||||| | | |||||| ||||||| |||||||||| ||| |||| |
|
|
T |
17508781 |
aatacaacattggtgcatgttcttagggaacaaaatatgtttgcatattttatagtttaggaaggatcacatgcaaggtgctctgcttactg |
17508872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 51160944 - 51161021
Alignment:
Q |
253 |
tgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcact |
330 |
Q |
|
|
||||||| ||||| |||| |||||||||||| |||||||||||||||| | |||| || |||||||||| ||||||| |
|
|
T |
51160944 |
tgcatgttcttagaaaacaaaacatgtgtgcaaattttatggctaaggagggatcatattcaaggtgctctgctcact |
51161021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 50426013 - 50426129
Alignment:
Q |
215 |
tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacataca |
314 |
Q |
|
|
|||||||| |||||| | ||||||||||||||||| ||||| | ||| |||||| || |||| |||| |||||||||| ||||||| ||||||| || |
|
|
T |
50426013 |
tagagatgatttacacggaaatgaaaatacaacatttgtgcatatttttaaggaacaaaatatgtatgcatattttatggccaaggaaggatcacatgca |
50426112 |
T |
|
Q |
315 |
aggtgctcggctcactg |
331 |
Q |
|
|
| ||||| |||||||| |
|
|
T |
50426113 |
atgtgctttgctcactg |
50426129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 53590509 - 53590463
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatcgt |
212 |
Q |
|
|
|||||||||||||||||| |||||| ||||||||||| ||||||||| |
|
|
T |
53590509 |
atgcatttcttactatctgaatcttagtttggactcatactcatcgt |
53590463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 43445133 - 43445177
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatc |
210 |
Q |
|
|
||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
T |
43445133 |
atgcatttcttactatcccaattttggtttggacccacactcatc |
43445177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 7321199 - 7321232
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggac |
199 |
Q |
|
|
|||||||| ||||||||||||||||||||||||| |
|
|
T |
7321199 |
atgcattttttactatctcaatcttggtttggac |
7321232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 331
Target Start/End: Complemental strand, 39997595 - 39997470
Alignment:
Q |
206 |
tcatcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagta |
305 |
Q |
|
|
||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||||| |||||||| || || ||||||||| ||||||||||||||||| | |
|
|
T |
39997595 |
tcatcatattagagatgctttccatgggaatagaaacacaacattgatgcatgttcttagggagcaaaatatgtgtgcaaattttatggctaaggaatga |
39997496 |
T |
|
Q |
306 |
tcacatacaaggtgctcggctcactg |
331 |
Q |
|
|
|||||| ||||||||||||||||||| |
|
|
T |
39997495 |
tcacatccaaggtgctcggctcactg |
39997470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 16824192 - 16824076
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| || |||||| || |||||||||||||| ||| ||||||| |
|
|
T |
16824192 |
tattagagatgctttacatgaaaatgaaaatacaacattggcgcatgttcttagggaacaaaatatgtgtacaaattttatggctaagaaaggatcacat |
16824093 |
T |
|
Q |
312 |
acaaggtgctcggctca |
328 |
Q |
|
|
|||||||||| ||||| |
|
|
T |
16824092 |
gcaaggtgctctgctca |
16824076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 8266791 - 8266901
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||| ||||| ||||||| | |||| |||||||||||| ||||||| ||||||||||| || | |||||||||||||||||||| ||| ||||||| |
|
|
T |
8266791 |
tattaaagatgttttacatggaaatggtaatacaacattggtgcatgttcttagggaacaaaatacttgtgcagattttatggctaaagaaagatcacat |
8266890 |
T |
|
Q |
312 |
acaaggtgctc |
322 |
Q |
|
|
|||||||||| |
|
|
T |
8266891 |
gcaaggtgctc |
8266901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 11075885 - 11076001
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||| ||||||||||||| |||| ||||||||||||| ||||||| | || ||||| || ||||||| || ||||||||||||||||| ||||||| |
|
|
T |
11075885 |
tattaaagatgctttacatgaaaatggaaatacaacattggtgcatgttcctaacgaacaaaatatgtgtgtaggttttatggctaaggaagaatcacat |
11075984 |
T |
|
Q |
312 |
acaaggtgctcggctca |
328 |
Q |
|
|
||| || ||| ||||| |
|
|
T |
11075985 |
gcaaagtactctgctca |
11076001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 18565921 - 18566008
Alignment:
Q |
240 |
aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctc |
327 |
Q |
|
|
|||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||||| ||||||| |||| || ||| |||||| |||| |
|
|
T |
18565921 |
aatacaacattggtgcatgttcttagggaacaaaacatatgtgtagattttatggttaaggaatgatcatatgcaaagtgctctgctc |
18566008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 2887592 - 2887710
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagg-gaacataacatgtgtgcagattttatggctaaggaagtatcaca |
310 |
Q |
|
|
||||||||||| |||| || | |||||||||||||||||| ||||||| | ||| |||| || ||||||| | ||||||||| ||||||| ||| || |
|
|
T |
2887592 |
tattagagatgatttatatggaaatgaaaatacaacattggtgcatgttttaaggaaaacaaaatatgtgtgtaaattttatggtcaaggaaggatctca |
2887691 |
T |
|
Q |
311 |
tacaaggtgctcggctcac |
329 |
Q |
|
|
| |||||||||| |||||| |
|
|
T |
2887692 |
tgcaaggtgctctgctcac |
2887710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 9427761 - 9427871
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||| ||||||| |||| |||||| ||||||||||| || || || |||||||| | ||||||||| ||||||| |
|
|
T |
9427761 |
tattagagatgttttacatggaaatggtaatacaagattggcgcatgttcttagggaacaaaattcgtatgtagattttacgactaaggaaggatcacat |
9427860 |
T |
|
Q |
312 |
acaaggtgctc |
322 |
Q |
|
|
|||||||||| |
|
|
T |
9427861 |
gcaaggtgctc |
9427871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 3620969 - 3620880
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga |
301 |
Q |
|
|
|||||||||| ||||||| | ||||| || || ||||| ||||||| ||||| ||||| ||||||||| || |||||||||||||||| |
|
|
T |
3620969 |
tattagagatattttacatggaaatgataacactacattagtgcatgttcttagagaacaaaacatgtgtacaaattttatggctaagga |
3620880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 2887224 - 2887267
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcat |
209 |
Q |
|
|
|||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
T |
2887224 |
atgcattttttactatcccaatcttggtttggacccacactcat |
2887267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 15243518 - 15243637
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
T |
15243518 |
tattagagatgttttacatgaaaatgaaaaaacaacattggtgcatgttcttagggaacaatacatgtgtgcatattttatggctaaggaaggatcacat |
15243617 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
|||||||||| |||||||| |
|
|
T |
15243618 |
gcaaggtgctctgctcactg |
15243637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 1758704 - 1758589
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||| ||| || || |||||||||||||||||||||||| ||||||| |
|
|
T |
1758704 |
tattagagatgatttacatgaaaatggaaatacaacattgatgcatgttcttaggggacaaaatatatgtgcagattttatggctaaggaacgatcacat |
1758605 |
T |
|
Q |
312 |
acaaggtgctcggctc |
327 |
Q |
|
|
|||| ||||| |||| |
|
|
T |
1758604 |
gcaagatgctctgctc |
1758589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 12607975 - 12608074
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||| ||||||||||||| ||||||| | || |||||| || |||||||||||||||||||||||||||| ||||||| |
|
|
T |
12607975 |
tattagagatggtttacatggaaatggaaatacaacattggtgcatgttcataaggaacaaaatatgtgtgcagattttatggctaaggaaggatcacat |
12608074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 12563321 - 12563435
Alignment:
Q |
215 |
tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacataca |
314 |
Q |
|
|
||||||| |||||||| | |||||||||||||||||| ||||||| ||||| || | || ||||||||||||||||||| |||||||| ||||||| || |
|
|
T |
12563321 |
tagagattctttacatggaaatgaaaatacaacattggtgcatgtttttaggaaaaa-aatatgtgtgcagattttatggttaaggaaggatcacatgca |
12563419 |
T |
|
Q |
315 |
aggtgctcggctcact |
330 |
Q |
|
|
||||||| ||||||| |
|
|
T |
12563420 |
aggtgctatgctcact |
12563435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 12597097 - 12597177
Alignment:
Q |
239 |
aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtg |
319 |
Q |
|
|
||||| ||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
T |
12597097 |
aaatataactttggtgcatgttcttagggaacaaaatatgtgtgcagattttatggctaaggaaggatcacattcaaggtg |
12597177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 36128147 - 36128261
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
|||||||||| || |||||| |||||||||| ||||||| ||||||| ||||||| || ||||||||| ||||||||||||||||| ||||||| |
|
|
T |
36128147 |
tattagagatcctatacataaaaatgaaaatataacattggtgcatgtt----gggaacaaaatatgtgtgcaaattttatggctaaggaaagatcacat |
36128242 |
T |
|
Q |
312 |
acaaggtgctcggctcact |
330 |
Q |
|
|
|||||||||| ||||||| |
|
|
T |
36128243 |
gcaaggtgctctgctcact |
36128261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 28932313 - 28932223
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa |
302 |
Q |
|
|
||||| ||||||| ||||| | | || ||||||||||||| ||||||| ||||| ||||| || ||||||| ||||||||||||||||||| |
|
|
T |
28932313 |
tattaaagatgctctacatggaagtggaaatacaacattggtgcatgttcttagagaacaaaatatgtgtgtagattttatggctaaggaa |
28932223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 15243150 - 15243195
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatcg |
211 |
Q |
|
|
|||||| |||||||||| ||||| |||||||||| ||||||||||| |
|
|
T |
15243150 |
atgcatctcttactatcccaatcctggtttggacccacactcatcg |
15243195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 23589609 - 23589654
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatcg |
211 |
Q |
|
|
||||||||||||| ||| ||||| |||||||||| ||||||||||| |
|
|
T |
23589609 |
atgcatttcttaccatcccaatcctggtttggacccacactcatcg |
23589654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 1759063 - 1759019
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatc |
210 |
Q |
|
|
|||||||||||||||| |||||||||||||||| || ||||||| |
|
|
T |
1759063 |
atgcatttcttactattccaatcttggtttggacccatactcatc |
1759019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 12562951 - 12562995
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatc |
210 |
Q |
|
|
|||||||||||| |||| ||||||| |||||||| |||||||||| |
|
|
T |
12562951 |
atgcatttcttattatcccaatcttcgtttggacccacactcatc |
12562995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 54849 - 54730
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||| |||||||||||| ||||||| |||||||||| || ||||||||||| |||||||||||||||| ||||||| |
|
|
T |
54849 |
tattagagatgttttacatggaaatggtaatacaacattgttgcatgtttttagggaacaaaatatgtgtgcagactttatggctaaggaagaatcacat |
54750 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
|||||||||| |||||||| |
|
|
T |
54749 |
gcaaggtgctctgctcactg |
54730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 44440461 - 44440571
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||| |||||||| ||||||| |
|
|
T |
44440461 |
tattagagatgttttacatgaaaatgaaaatacaacattggtgcatgttcttagggaacaaaatatgtgtgcagattttatggttaaggaaggatcacat |
44440560 |
T |
|
Q |
312 |
acaaggtgctc |
322 |
Q |
|
|
|||| ||||| |
|
|
T |
44440561 |
gcaagttgctc |
44440571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 4653720 - 4653839
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||| ||||||| ||||| | |||| |||||| | |||| | ||||| || | ||||| || ||||||||| |||||||||||||||||| ||||||| |
|
|
T |
4653720 |
tattaaagatgctctacatggaaatggaaatactatattggtacatgttctcatagaacaaaatatgtgtgcaaattttatggctaaggaaggatcacat |
4653819 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
||||||||||| |||||||| |
|
|
T |
4653820 |
acaaggtgctctgctcactg |
4653839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 8271212 - 8271091
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaataca--acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac |
309 |
Q |
|
|
||||||||||||||||||| |||| ||||||| ||| || | ||||| ||||||||||| || |||| ||||||||||||||||||||||| ||||| |
|
|
T |
8271212 |
tattagagatgctttacatgaaaatggaaatacacaacagtggttcatgttcttagggaacaaaatatgtatgcagattttatggctaaggaagaatcac |
8271113 |
T |
|
Q |
310 |
atacaaggtgctcggctcactg |
331 |
Q |
|
|
|| |||| |||| |||||||| |
|
|
T |
8271112 |
atgcaagatgctatgctcactg |
8271091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 45036141 - 45036059
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatgg |
294 |
Q |
|
|
||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||| |
|
|
T |
45036141 |
tattagagatgttttacatgaaaatgaaaatacaacattagtgcatgttcttagggaacaaaacatgtgtgcaaattttatgg |
45036059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 22540123 - 22540206
Alignment:
Q |
239 |
aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctc |
322 |
Q |
|
|
||||||||||||| ||||||| || | ||||| || || ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
T |
22540123 |
aaatacaacattggtgcatgttctcggagaacaaaatatatgtgcagattttatgactaaggaagagtcacatacaaggtgctc |
22540206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 6571117 - 6571012
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||||||| ||| | ||| |||||||| ||| | ||||| ||||||||||| || | |||||||||||||||| ||||||||| ||| ||| |
|
|
T |
6571117 |
tattagagatgctttgcatggaaatagaaatacaatattagtacatgttcttagggaacaaaatacgtgtgcagattttatgactaaggaaggatcgcat |
6571018 |
T |
|
Q |
312 |
acaagg |
317 |
Q |
|
|
||||| |
|
|
T |
6571017 |
gcaagg |
6571012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 4653350 - 4653395
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatcg |
211 |
Q |
|
|
||||||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
T |
4653350 |
atgcatttcttactatcccaatcatggtttggacccacactcatcg |
4653395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 45041793 - 45041761
Alignment:
Q |
262 |
ttagggaacataacatgtgtgcagattttatgg |
294 |
Q |
|
|
|||||||||| |||||||||||||||||||||| |
|
|
T |
45041793 |
ttagggaacaaaacatgtgtgcagattttatgg |
45041761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 27046241 - 27046122
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || | ||| ||| ||||| || ||||||||| ||||||| |
|
|
T |
27046241 |
tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttatggaacaaaatacgtgggcaaattttgtgactaaggaaggatcacat |
27046142 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
|||||||||| |||||||| |
|
|
T |
27046141 |
gcaaggtgctctgctcactg |
27046122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 12501706 - 12501825
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||| | ||||||| |||| ||||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||| | || ||| |
|
|
T |
12501706 |
tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaaggacggattgcat |
12501805 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
|||||||||| |||||||| |
|
|
T |
12501806 |
gcaaggtgctctgctcactg |
12501825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 10329055 - 10328937
Alignment:
Q |
213 |
attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacata |
312 |
Q |
|
|
|||||||||||||||||| | |||| || ||||||||| ||||||| ||||||||||| || ||||||||| ||||||| | ||||||| ||||||| |
|
|
T |
10329055 |
attagagatgctttacatggaaatgggaacacaacattggtgcatgttcttagggaacaaaatatgtgtgcaaattttatagtgaaggaaggatcacatg |
10328956 |
T |
|
Q |
313 |
caaggtgctcggctcactg |
331 |
Q |
|
|
||| |||||| |||||||| |
|
|
T |
10328955 |
caaagtgctctgctcactg |
10328937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 321
Target Start/End: Complemental strand, 5464648 - 5464539
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||| ||||| ||||||| ||||| | ||| ||||||| || | ||||||||||||||||||||||||| ||||||| |
|
|
T |
5464648 |
tattagagatgttttacatggaaatggaaatagaacattggtgcatattcttggggaacaaaatacatgtgcagattttatggctaaggaaggatcacat |
5464549 |
T |
|
Q |
312 |
acaaggtgct |
321 |
Q |
|
|
||||||||| |
|
|
T |
5464548 |
gcaaggtgct |
5464539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12527340 - 12527450
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||| | ||||||| |||| ||||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||| | || ||| |
|
|
T |
12527340 |
tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaaggacggattgcat |
12527439 |
T |
|
Q |
312 |
acaaggtgctc |
322 |
Q |
|
|
|||||||||| |
|
|
T |
12527440 |
gcaaggtgctc |
12527450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 5949635 - 5949538
Alignment:
Q |
234 |
aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactg |
331 |
Q |
|
|
|||| ||||||||||||| ||||||| ||||||||||| |||||||||| ||||||| ||||||| ||| ||||||| |||||| ||| ||||||| |
|
|
T |
5949635 |
aatggaaatacaacattggtgcatgttcttagggaacaaaacatgtgtgttgattttacggctaagaaaggatcacatgcaaggtactctactcactg |
5949538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 41029397 - 41029472
Alignment:
Q |
253 |
tgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctca |
328 |
Q |
|
|
||||||| ||| | ||||| || ||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
T |
41029397 |
tgcatgttcttcgcgaacaaaatatgtgtgtagattttatggctaaggaagggtcacatacaaggtgctctgctca |
41029472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 25828485 - 25828380
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||| ||||||| ||||| |||| ||||||||||||| ||||||| ||| | ||| || |||||||||||||||||| ||||||||| ||||||| |
|
|
T |
25828485 |
tattaaagatgctctacatgaaaatggaaatacaacattggtgcatgttattacg-aacgaaatatgtgtgcagattttatgtctaaggaaggatcacat |
25828387 |
T |
|
Q |
312 |
acaaggt |
318 |
Q |
|
|
|||||| |
|
|
T |
25828386 |
gcaaggt |
25828380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 31443626 - 31443676
Alignment:
Q |
252 |
atgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa |
302 |
Q |
|
|
|||||||| ||||||||| | || ||||||| ||||||||||||||||||| |
|
|
T |
31443626 |
atgcatgttcttagggaataaaatatgtgtgtagattttatggctaaggaa |
31443676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 12501645 - 12501685
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacact |
206 |
Q |
|
|
||||||||||||||||| ||||| |||||||||| |||||| |
|
|
T |
12501645 |
atgcatttcttactatcccaatcctggtttggacccacact |
12501685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 12527279 - 12527319
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacact |
206 |
Q |
|
|
||||||||||||||||| ||||| |||||||||| |||||| |
|
|
T |
12527279 |
atgcatttcttactatcccaatcctggtttggacccacact |
12527319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 13278638 - 13278682
Alignment:
Q |
287 |
ttttatggctaaggaagtatcacatacaaggtgctcggctcactg |
331 |
Q |
|
|
||||||||||||||||| || |||| |||||||||| |||||||| |
|
|
T |
13278638 |
ttttatggctaaggaaggatgacatgcaaggtgctctgctcactg |
13278682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 332
Target Start/End: Original strand, 50945993 - 50946112
Alignment:
Q |
213 |
attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacata |
312 |
Q |
|
|
|||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||| || ||| ||| ||||||||| |||||||||| ||||||| |
|
|
T |
50945993 |
attagagatgttttacatgaaaatgaaaatacaacattgatgcatgtttttagagaacaaaatatgcgtgtagattttattgctaaggaaggatcacatg |
50946092 |
T |
|
Q |
313 |
caaggtgctcggctcactga |
332 |
Q |
|
|
|||| ||||| ||||||||| |
|
|
T |
50946093 |
caagatgctctgctcactga |
50946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 11371634 - 11371750
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
|||||||||| ||||||| | |||| ||||||||||||| ||||||| |||||| |||| || ||||||||||||||||||||||||||| |||| || |
|
|
T |
11371634 |
tattagagattatttacatggaaatggaaatacaacattggtgcatgttcttagg-aacaaaatatgtgtgcagattttatggctaaggaatgatcaaat |
11371732 |
T |
|
Q |
312 |
acaaggtgctcggctcac |
329 |
Q |
|
|
|||||||||| |||||| |
|
|
T |
11371733 |
gcaaggtgctctgctcac |
11371750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 41940635 - 41940530
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||| |||||||||||||||||||| |||||||||| || || |||||| |||||||||||||||||| ||||||| |
|
|
T |
41940635 |
tattagagatgttttacatggaaatggtaatacaacattgatgcatgttcttagggaac--aaaatatgtgcaaattttatggctaaggaaggatcacat |
41940538 |
T |
|
Q |
312 |
acaaggtg |
319 |
Q |
|
|
||||||| |
|
|
T |
41940537 |
gcaaggtg |
41940530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 25969778 - 25969893
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || ||||||||| ||||||| ||| |||| ||||||| |
|
|
T |
25969778 |
tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttaaggaacaaaatatgtgtgcatattttatagct---gaagaatcacat |
25969874 |
T |
|
Q |
312 |
acaaggtgctcggctcact |
330 |
Q |
|
|
||||||| || ||||||| |
|
|
T |
25969875 |
gcaaggtgttctgctcact |
25969893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 47924360 - 47924240
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
|||| |||||| ||||||| |||| ||||| ||||||| ||||| | || || ||||| ||||||||||| ||||||||||||||| ||| |||| || |
|
|
T |
47924360 |
tattcgagatgttttacatgaaaatggaaatataacattggtgcatattctcagcgaacaaaacatgtgtgctgattttatggctaagtaaggatcatat |
47924261 |
T |
|
Q |
312 |
acaaggtgctcggctcactga |
332 |
Q |
|
|
|||||||||| ||||||||| |
|
|
T |
47924260 |
gcaaggtgctctgctcactga |
47924240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 27184855 - 27184736
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| |||| ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| ||||| | |
|
|
T |
27184855 |
tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcacgt |
27184756 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
||| |||||| |||||||| |
|
|
T |
27184755 |
gcaatgtgctctgctcactg |
27184736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 40656230 - 40656116
Alignment:
Q |
216 |
agagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaa |
315 |
Q |
|
|
||||||| ||||||| | |||| |||||| |||||| ||||||| || || ||||| || |||||||||||||||||| ||||||||| |||| || | | |
|
|
T |
40656230 |
agagatgttttacatggaaatggaaatacgacattggtgcatgttctaagagaacaaaatatgtgtgcagattttatgactaaggaagaatcatatgcga |
40656131 |
T |
|
Q |
316 |
ggtgctcggctcact |
330 |
Q |
|
|
|||||| ||||||| |
|
|
T |
40656130 |
ggtgctatgctcact |
40656116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 54259406 - 54259495
Alignment:
Q |
209 |
tcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaa |
298 |
Q |
|
|
||||| |||||||| ||||||| | |||| ||||||||||||| |||||| ||||||||||| || ||||||||| |||| |||||||| |
|
|
T |
54259406 |
tcgtaatagagatgatttacatggaaatggaaatacaacattggagcatgttcttagggaacaaaatatgtgtgcaaatttcatggctaa |
54259495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 6450497 - 6450607
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| |||| |||||||||| || | ||||| ||||||||||| || ||||||| ||||||||||| |||||| ||||||| |
|
|
T |
6450497 |
tattagagatgatttacatgaaaatggaaatacaacagtggttcatgttcttagggaacaaaatatgtgtgtagattttatggttaaggataaatcacat |
6450596 |
T |
|
Q |
312 |
acaaggtgctc |
322 |
Q |
|
|
|||| ||||| |
|
|
T |
6450597 |
gcaagatgctc |
6450607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 47924729 - 47924683
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactcatcgt |
212 |
Q |
|
|
||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
T |
47924729 |
atgcatttcttactatcccaatcttggtttggacccacactcatcgt |
47924683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 23397636 - 23397572
Alignment:
Q |
244 |
caacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca |
308 |
Q |
|
|
|||||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||| |||| |||| |
|
|
T |
23397636 |
caacattggtgcatgttcttagggaacaaaacatatgtgcaaattttatggctaatgaagaatca |
23397572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 41940995 - 41940954
Alignment:
Q |
166 |
atgcatttcttactatctcaatcttggtttggactcacactc |
207 |
Q |
|
|
||||||||||||||||| |||||||||||||||| ||||||| |
|
|
T |
41940995 |
atgcatttcttactatcccaatcttggtttggacccacactc |
41940954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 2443355 - 2443474
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||| ||||||| |||| ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| ||||| | |
|
|
T |
2443355 |
tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcacgt |
2443454 |
T |
|
Q |
312 |
acaaggtgctcggctcactg |
331 |
Q |
|
|
||| |||||| |||||||| |
|
|
T |
2443455 |
gcaatgtgctctgctcactg |
2443474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 29047284 - 29047387
Alignment:
Q |
212 |
tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat |
311 |
Q |
|
|
||||||||||||||||||| | |||| |||| |||||| | ||| | ||||||||||| || |||||||||||||||||||||| | ||| ||||||| |
|
|
T |
29047284 |
tattagagatgctttacatggaaatggtaataaaacattagtacattt-cttagggaacaaaatatgtgtgcagattttatggctatgtaaggatcacat |
29047382 |
T |
|
Q |
312 |
acaag |
316 |
Q |
|
|
|||| |
|
|
T |
29047383 |
gcaag |
29047387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 38697504 - 38697446
Alignment:
Q |
264 |
agggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctc |
322 |
Q |
|
|
|||||||| || |||| |||||||||||| |||||||||| ||||||| |||| ||||| |
|
|
T |
38697504 |
agggaacaaaatatgtctgcagattttatagctaaggaaggatcacatgcaagatgctc |
38697446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 1362525 - 1362581
Alignment:
Q |
246 |
acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa |
302 |
Q |
|
|
|||||||| ||||| ||||| ||||| || |||| || ||||||||||||||||||| |
|
|
T |
1362525 |
acattgatacatgttcttagtgaacaaaatatgtatgtagattttatggctaaggaa |
1362581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1630 times since January 2019
Visitors: 8581