View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_22 (Length: 326)
Name: NF4418_high_22
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_22 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 27229730 - 27230060
Alignment:
| Q |
12 |
atgaacaaaaagagttggagggattatgtaactacattccatccacgtcattagctttaaacaaacacttcttgccacctcaaaatgaagagaaagatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27229730 |
atgaacaaaaagagttggagggattatgtaactacattccatccacattattagctttaaacaaacacttcttgccacctcaaaatgaagagaaagatga |
27229829 |
T |
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| Q |
112 |
aaaaactcctcttccttgatccacttctccaattcatgtaattgatttccttccctaataacccaaataaaaggtctatttgaagcttctaatcccaaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27229830 |
aaaaactcctcttccttgatccacttctccaattcatgtaattgatttccttccctaataacccaaataaaaggtctatttgaagcttcaaatcccaaac |
27229929 |
T |
|
| Q |
212 |
caagctctatcaattgaac---------------tatacttccaagctctatcaaaccacttcatgt-nnnnnnntgttcatccattgaagccttgtcct |
295 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27229930 |
caagctctatcaattgaactaatgttagattacatatacttccaagctctatcaaaccacttcatgtaaaaaaaatgttcatccattgaagccttgtcct |
27230029 |
T |
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| Q |
296 |
aagaaataaattcctcggatttaaatcttca |
326 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27230030 |
aagaaataaattcctcggatttaaatcttca |
27230060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 27269462 - 27269566
Alignment:
| Q |
12 |
atgaacaaaaagagttggagggattatgtaactacattccatccacgtcattagctttaaacaaacacttcttgccacctcaaaatgaagagaaagatga |
111 |
Q |
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| T |
27269462 |
atgaacaaaaagagttggagggattatgtaactacattccatccacgtcattagctttaaccaaacacttcttgccacctcaaaatgaagagaaagatga |
27269561 |
T |
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| Q |
112 |
aaaaa |
116 |
Q |
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||||| |
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| T |
27269562 |
aaaaa |
27269566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 27269784 - 27269852
Alignment:
| Q |
48 |
ttccatccacgtcattagctttaaacaaacacttcttgccacctcaaaatgaagagaaagatgaaaaaa |
116 |
Q |
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| T |
27269784 |
ttccatccacgtcattagctttaaccaaacacttcttgccacctcaaaatgaagagaaagatgaaaaaa |
27269852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 27224346 - 27224401
Alignment:
| Q |
172 |
acccaaataaaaggtctatttgaagcttctaatcccaaaccaagctctatcaattg |
227 |
Q |
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| T |
27224346 |
acccaaataaacggtctattggtagcttctaatcccaaaccaaattctatcaattg |
27224401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 41537001 - 41536931
Alignment:
| Q |
154 |
tgatttccttccctaataacccaaataaaaggtctatttgaagcttctaatcccaaaccaagctctatcaa |
224 |
Q |
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| T |
41537001 |
tgatttccttctcttaaaacccaaataaagggtctttttgttgcttctaatgctaaaccaagctctatcaa |
41536931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 41518035 - 41517952
Alignment:
| Q |
141 |
caattcatgtaattgatttccttccctaataacccaaataaaaggtctatttgaagcttctaatcccaaaccaagctctatcaa |
224 |
Q |
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| T |
41518035 |
caattcttctaattcatttccttctcttaaaacccaaataaaaggtatttttgttgcttctaatgctaaaccaagttctatcaa |
41517952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 48532680 - 48532626
Alignment:
| Q |
156 |
atttccttccctaataacccaaataaaaggtctatttgaagcttctaatcccaaa |
210 |
Q |
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||||||||||||||||||||||||||| || ||||||| ||||| ||| ||||| |
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| T |
48532680 |
atttccttccctaataacccaaataaatggcctatttgtcgcttccaatgccaaa |
48532626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41511324 - 41511272
Alignment:
| Q |
158 |
ttccttccctaataacccaaataaaaggtctatttgaagcttctaatcccaaa |
210 |
Q |
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||||||||||||||||||||||||| || | |||| ||||||||||||||| |
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| T |
41511324 |
ttccttccctaataacccaaataaatggaatttttgttgcttctaatcccaaa |
41511272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 8136682 - 8136752
Alignment:
| Q |
154 |
tgatttccttccctaataacccaaataaaaggtctatttgaagcttctaatcccaaaccaagctctatcaa |
224 |
Q |
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|||||||| || ||||||||||||||||||||| | |||| ||||||||| | || || ||||||||||| |
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| T |
8136682 |
tgatttccctctctaataacccaaataaaaggtttttttgttgcttctaatgctaaccctagctctatcaa |
8136752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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