View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_25 (Length: 281)
Name: NF4418_high_25
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_25 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 34820480 - 34820212
Alignment:
| Q |
13 |
acctgtggagtaataatgtaattaagtttacaagtgaaatatattataattacttatgttttcttttttggttgtataagacattattcaatactagtgg |
112 |
Q |
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| T |
34820480 |
acctgtggggtaataatgtaattaagtttacaagtgaaatatattataattacttatgttttcttttttggttgtataagacattattcaatactagtgg |
34820381 |
T |
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| Q |
113 |
aaaaaataaagttgagatattgacatctttgtcctcatagaatagagacgtattcattctgccaattaaattgagttggtcattgagacttttcataggc |
212 |
Q |
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| T |
34820380 |
aaaaaataaagttgagatattgacatctttgtcctcatagaatagagacgtattcattctgccaattcaattgagttggccattgagacttttcataggc |
34820281 |
T |
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| Q |
213 |
tagcatccttgttttctttatgtcctttttgtcccatggtcagaatagacatttcaaagttaaattctt |
281 |
Q |
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| T |
34820280 |
tagcatccttgttttctttatgtcctttttgtcccatggtcagaatagacgtttcaaagttaaattctt |
34820212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 104 - 281
Target Start/End: Complemental strand, 28940714 - 28940537
Alignment:
| Q |
104 |
tactagtggaaaaaataaagttgagatattgacatctttgtcctcatagaatagagacgtattcattctgccaattaaattgagttggtcattgagactt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28940714 |
tactagtggaaaaaataaagttgagatattgacatctttgtcctcgtagaatagagacgtattcattctgccaattaaattgagttggccattgagactt |
28940615 |
T |
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| Q |
204 |
ttcataggctagcatccttgttttctttatgtcctttttgtcccatggtcagaatagacatttcaaagttaaattctt |
281 |
Q |
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| T |
28940614 |
ttcataggctagcatccttgttttctttatgtcctttttgtcccatggtcagaatagacgtttcaaagttaaattctt |
28940537 |
T |
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