View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_3 (Length: 702)
Name: NF4418_high_3
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_3 |
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| [»] scaffold0148 (2 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 289 - 690
Target Start/End: Original strand, 27771 - 28186
Alignment:
| Q |
289 |
cctttttatccggccttcctgttttaatcatggttaaattcaagaaagccgtgccattttcagtacagaatgttgtttttctcctcgtacaatgtagtga |
388 |
Q |
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| T |
27771 |
cctttatatctggccttcctgttttaatcatggtcaagttcaagaacttcgtgtcattttcagtacagaatgttgtttttctcctcgtacaatgtcgtga |
27870 |
T |
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| Q |
389 |
agaatcttcctctccgtggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatat |
488 |
Q |
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| T |
27871 |
agaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatat |
27970 |
T |
|
| Q |
489 |
gttaaacatttgcttcttggctgcttccatataactggcaaatcatcttccacccactgtatcacacctgtcgaattgaggaacaatcttttattgttat |
588 |
Q |
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| T |
27971 |
gttaaacatttgcttcttggctgcttccatataactagcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttat |
28070 |
T |
|
| Q |
589 |
actgttcgttacgaattactgatctgttccgtttttcaggtgaactgaatttgtt--------------caagaaaactgaagttggtcaacaaattata |
674 |
Q |
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| T |
28071 |
actgttcgttacgaattactgatctgttccgtttttcaggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattata |
28170 |
T |
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| Q |
675 |
aacctcaaagctgatg |
690 |
Q |
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| T |
28171 |
aacctcaaagctgatg |
28186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 27501 - 27710
Alignment:
| Q |
25 |
gaagaagagagaaatatgtctctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagt |
124 |
Q |
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| T |
27501 |
gaagaagagagaaatatgtctctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagt |
27600 |
T |
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| Q |
125 |
atactcttctttaagagtagttaaactttgtgtccagatccaacagtttgaaggaataagaccacgctgctgcttatcagggacctgaccatatgagtaa |
224 |
Q |
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| T |
27601 |
atactcttctttaagagtagttaaactgtgtgtccagatccaacagtttgaaggaataagaccacgctgctgcttatcagggacttgagcatatgagtaa |
27700 |
T |
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| Q |
225 |
gcctggcact |
234 |
Q |
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| T |
27701 |
gcctggcact |
27710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 2485 - 2617
Alignment:
| Q |
45 |
tctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtag |
144 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
2485 |
tctaatttaatcatcacatgcatacctacctctgatttatcaactaggacaatgagtctacgatcataatcccaattagtatactcttctttaagagtag |
2584 |
T |
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| Q |
145 |
ttaaactttgtgtccagatccaacagtttgaag |
177 |
Q |
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| T |
2585 |
ttaaactttgtgtccagatccaacaatttgaag |
2617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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