View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418_high_31 (Length: 250)

Name: NF4418_high_31
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418_high_31
NF4418_high_31
[»] chr2 (6 HSPs)
chr2 (12-250)||(41650159-41650397)
chr2 (19-238)||(43227769-43227988)
chr2 (102-250)||(43224056-43224199)
chr2 (133-250)||(43213347-43213464)
chr2 (133-239)||(41654710-41654816)
chr2 (134-238)||(43206374-43206478)
[»] chr8 (2 HSPs)
chr8 (145-237)||(5073627-5073719)
chr8 (33-69)||(13267906-13267942)
[»] scaffold0633 (1 HSPs)
scaffold0633 (33-69)||(8943-8979)
[»] chr1 (1 HSPs)
chr1 (33-69)||(41666250-41666286)
[»] chr4 (2 HSPs)
chr4 (33-72)||(43365909-43365948)
chr4 (35-65)||(49888328-49888358)
[»] chr3 (2 HSPs)
chr3 (10-65)||(25189514-25189569)
chr3 (36-65)||(39450803-39450832)
[»] chr7 (1 HSPs)
chr7 (10-62)||(37327454-37327506)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41650397 - 41650159
Alignment:
Q  12 atgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaac 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41650397 atgaacgtcaataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaacccataattggaaaccaaaac 41650298  T
Q  112 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650297 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 41650198  T
Q  212 cctgtcactgcaactggatgtttatatgggacacctaat 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41650197 cctgtcactgcaactggatgtttatatgggacacctaat 41650159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 43227769 - 43227988
Alignment:
Q  19 tcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaacactca-g 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||| |||| || || |||| |||||||||| |    
T  43227769 tcgataaaattgttagaaaattctcttgaaaacttcatttaaaacatgtgatatagaaaaccaagataaaa-tccacaactgaaaactaaaacactcaag 43227867  T
Q  118 gaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtc 217  Q
    |||||||   |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  43227868 gaaaaaaaaaatgcagacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgta 43227967  T
Q  218 actgcaactggatgtttatat 238  Q
    |||||||||||||||||||||    
T  43227968 actgcaactggatgtttatat 43227988  T

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Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 43224056 - 43224199
Alignment:
Q  102 aaaccaaaacactcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgta 201  Q
    |||||||||||||||| |||||||||||||    ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  43224056 aaaccaaaacactcag-aaaaaatgtagac----ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgta 43224150  T
Q  202 accaataacacctgtcactgcaactggatgtttatatgggacacctaat 250  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  43224151 accaataacacctgtcactgcaactggatgtttatattgaacacctaat 43224199  T

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Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 43213347 - 43213464
Alignment:
Q  133 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 232  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43213347 tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt 43213446  T
Q  233 ttatatgggacacctaat 250  Q
    ||||||||||||||||||    
T  43213447 ttatatgggacacctaat 43213464  T

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Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 41654816 - 41654710
Alignment:
Q  133 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 232  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41654816 tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 41654717  T
Q  233 ttatatg 239  Q
    |||||||    
T  41654716 ttatatg 41654710  T

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Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 43206374 - 43206478
Alignment:
Q  134 acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 233  Q
    ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43206374 acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 43206473  T
Q  234 tatat 238  Q
    |||||    
T  43206474 tatat 43206478  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
Q  145 aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttata 237  Q
    ||||||||||||||||||||| | ||| ||||||||||  |  |||||||||||| ||||||| ||||| || | ||||||||||| ||||||    
T  5073627 aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata 5073719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 13267942 - 13267906
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgtta 69  Q
    |||||||||  ||||||||||||||||||||||||||    
T  13267942 agaaaattcctttgaaaacttcatttaaaacatgtta 13267906  T

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Target: scaffold0633 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 8979 - 8943
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgtta 69  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8979 agaaaattttcttgaaaacttcatttaaaacatgtta 8943  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 41666250 - 41666286
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgtta 69  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41666250 agaaaattttcttgaaaacttcatttaaaacatgtta 41666286  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 43365948 - 43365909
Alignment:
Q  33 agaaaattctcttgaaaacttcatttaaaacatgttacat 72  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  43365948 agaaaattcccttaaaaacttcatttaaaacatgttacat 43365909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 49888328 - 49888358
Alignment:
Q  35 aaaattctcttgaaaacttcatttaaaacat 65  Q
    |||||||||||||||||||||||||||||||    
T  49888328 aaaattctcttgaaaacttcatttaaaacat 49888358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 25189569 - 25189514
Alignment:
Q  10 agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacat 65  Q
    |||||||| | |||||| |||| |  ||||||||||||||||||||||||||||||    
T  25189569 agatgaacattgataaaattgtaacgaaattctcttgaaaacttcatttaaaacat 25189514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 39450803 - 39450832
Alignment:
Q  36 aaattctcttgaaaacttcatttaaaacat 65  Q
    ||||||||||||||||||||||||||||||    
T  39450803 aaattctcttgaaaacttcatttaaaacat 39450832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 37327454 - 37327506
Alignment:
Q  10 agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaa 62  Q
    |||| ||| |||||||| |||  | ||||||||||||||||||||||||||||    
T  37327454 agattaacatcgataaaattgcaacaaaattctcttgaaaacttcatttaaaa 37327506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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