View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_high_34 (Length: 237)
Name: NF4418_high_34
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4418_high_34 |
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[»] scaffold0062 (1 HSPs) |
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[»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 1231074 - 1230855
Alignment:
Q |
8 |
ttgtacaacgatttgtaaaactgttttcgagatagaataaagaataaacaggaggaaaggaatatgataaaaactannnnnnnngtctttcactaaacca |
107 |
Q |
|
|
||||||||||||||||||||||||||| || | | ||||||||||||| |||||||||||||| || |||||||| |||||||||||||||| |
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|
T |
1231074 |
ttgtacaacgatttgtaaaactgtttttgaaacaaaataaagaataaatgggaggaaaggaataggacaaaaactattctttttgtctttcactaaacca |
1230975 |
T |
|
Q |
108 |
catctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataa |
207 |
Q |
|
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
1230974 |
catctcaactttttgtctcatgtacaaattac---ctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataa |
1230878 |
T |
|
Q |
208 |
taaaagttttattctgatgatgt |
230 |
Q |
|
|
||||||||||||||||||||||| |
|
|
T |
1230877 |
taaaagttttattctgatgatgt |
1230855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 36843497 - 36843431
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatat |
205 |
Q |
|
|
||||||||||||||||| |||||| ||||| ||||| ||| ||||||||| |||||||||| ||||| |
|
|
T |
36843497 |
ttatctaaaatacaaaactatcttattgtctaccaaaaattgtatatgacaaaaaattatttaatat |
36843431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 9435472 - 9435359
Alignment:
Q |
101 |
taaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattc |
200 |
Q |
|
|
||||||||||| |||||||||| | || |||||| | ||||||||||||||||||| ||||||||| ||||| ||| ||||| |||||||||| |||| |
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|
T |
9435472 |
taaaccacatcacaactttttgaccaatatacaaagt--tatctaaaatacaaaaatagctttttgtctaccaaaaatggtataagaccaaaaataattc |
9435375 |
T |
|
Q |
201 |
aatataataaaagttt |
216 |
Q |
|
|
||||| |||||||||| |
|
|
T |
9435374 |
aatatcataaaagttt |
9435359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 41720882 - 41720804
Alignment:
Q |
138 |
attatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
||||||||||||||||||||| ||||||||||| || ||||||||| ||| ||||||||| |||||| || ||||||| |
|
|
T |
41720882 |
attatctaaaatacaaaaataattttttgtccacaaaaaatagtataagactaaaaattatacaatatcattaaagttt |
41720804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 20644245 - 20644353
Alignment:
Q |
92 |
gtctttcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaa |
191 |
Q |
|
|
|||| ||||||||||||||| || ||| |||||| ||||||| |||| |||| ||||||||||| ||||||| |||||| ||| ||||| | ||| |
|
|
T |
20644245 |
gtctctcactaaaccacatcccagcttcttgtctcgtgtacaagttat---ctaagatacaaaaatagatttttgtacaccaaaaatcgtataaaatcaa |
20644341 |
T |
|
Q |
192 |
aaattattcaat |
203 |
Q |
|
|
|||||||||||| |
|
|
T |
20644342 |
aaattattcaat |
20644353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 40792486 - 40792410
Alignment:
Q |
105 |
ccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtata |
184 |
Q |
|
|
||||||| ||||||||||| | |||||||| |||| |||||||||||||||| ||||||||||| ||| ||| ||||| |
|
|
T |
40792486 |
ccacatcacaactttttgtttcatgtacaagttat---ctaaaatacaaaaatagctttttgtccatcaaaaatcgtata |
40792410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 43189817 - 43189887
Alignment:
Q |
146 |
aaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
||||||||||||| ||| |||||||| || || ||||| ||| ||||||||||||||| |||||||||| |
|
|
T |
43189817 |
aaatacaaaaataacttattgtccactaaatatcgtataagacaaaaaattattcaataccataaaagttt |
43189887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 7001868 - 7001828
Alignment:
Q |
163 |
tttgtccaccaacaatagtatatgaccaaaaattattcaat |
203 |
Q |
|
|
|||||||||||| ||| ||||| |||||||||||||||||| |
|
|
T |
7001868 |
tttgtccaccaaaaatcgtataagaccaaaaattattcaat |
7001828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 7381316 - 7381280
Alignment:
Q |
138 |
attatctaaaatacaaaaatatctttttgtccaccaa |
174 |
Q |
|
|
||||||||||||||||||||| |||||||||||||| |
|
|
T |
7381316 |
attatctaaaatacaaaaatagttttttgtccaccaa |
7381280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 31445886 - 31446000
Alignment:
Q |
98 |
cactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatta |
197 |
Q |
|
|
|||||||| ||||| |||||||||| | | |||||||||| ||||||||||||||||| |||||||| ||| || ||| ||| | || |||||||| |
|
|
T |
31445886 |
cactaaacaacatcacaactttttgccacacgtacaaatta---tctaaaatacaaaaataactttttgttcacaaaaaatcgtacaaga-taaaaatta |
31445981 |
T |
|
Q |
198 |
ttcaatataataaaagttt |
216 |
Q |
|
|
| ||||| |||||||||| |
|
|
T |
31445982 |
tccaataccataaaagttt |
31446000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 44000336 - 44000220
Alignment:
Q |
97 |
tcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatt |
196 |
Q |
|
|
||||||||||||||| ||| |||||||| | |||||| |||||| ||||||||||||| |||||||||||||| ||| ||||| ||||||||||| |
|
|
T |
44000336 |
tcactaaaccacatcacaattttttgtcccacgtacaa---gttatctgaaatacaaaaatagttttttgtccaccaaaaatcgtataagaccaaaaatt |
44000240 |
T |
|
Q |
197 |
attcaatataataaaagttt |
216 |
Q |
|
|
|||||||| |||||||||| |
|
|
T |
44000239 |
attcaataccataaaagttt |
44000220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 33364793 - 33364900
Alignment:
Q |
102 |
aaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattca |
201 |
Q |
|
|
|||||||||| ||||||||||||| | |||||| || | |||||||| |||||| | |||||||| |||| ||| ||||| || |||||||||||| |
|
|
T |
33364793 |
aaaccacatcacaactttttgtctcacgtacaagttgt---ctaaaatatcaaaatagcattttgtcccccaaaaatcgtataaaacaaaaaattattca |
33364889 |
T |
|
Q |
202 |
atataataaaa |
212 |
Q |
|
|
|| | |||||| |
|
|
T |
33364890 |
atgtcataaaa |
33364900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 16595219 - 16595284
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaata |
204 |
Q |
|
|
|||||||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||||||| |
|
|
T |
16595219 |
ttatctaaaatacaaaaatagctttttgttcaccaaaaatcgtataagaccaaaaattattcaata |
16595284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 4599698 - 4599624
Alignment:
Q |
139 |
ttatctaaaatacaaaaa-tatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaa |
212 |
Q |
|
|
|||||||||||||||||| || ||||||||| ||||| ||| |||| || ||||||||||||||| ||||||| |
|
|
T |
4599698 |
ttatctaaaatacaaaaaataactttttgtctaccaaaaattatataggataaaaaattattcaatacaataaaa |
4599624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 30798820 - 30798894
Alignment:
Q |
138 |
attatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaa |
212 |
Q |
|
|
|||||||||||||| |||||| || ||||||||||| ||| ||||| |||||||||||||||||||| |||||| |
|
|
T |
30798820 |
attatctaaaataccaaaatagtttgttgtccaccaaaaatcgtataagaccaaaaattattcaatatcataaaa |
30798894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 2761647 - 2761760
Alignment:
Q |
97 |
tcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatt |
196 |
Q |
|
|
||||||||||||| | ||| ||||||||| | |||||| ||||||||||||||||||||| ||||||| || ||| ||| |||| |||||||||| |
|
|
T |
2761647 |
tcactaaaccacaacacaattttttgtctcaagtacaa---attatctaaaatacaaaaatagatttttgt-caacaaaaatcatataaaaccaaaaatt |
2761742 |
T |
|
Q |
197 |
attcaatataataaaagt |
214 |
Q |
|
|
|||||||| |||||||| |
|
|
T |
2761743 |
attcaatactataaaagt |
2761760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 4895435 - 4895372
Alignment:
Q |
141 |
atctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaata |
204 |
Q |
|
|
|||||||||||||||||| ||||||| |||||| ||| ||||| ||| |||| |||||||||| |
|
|
T |
4895435 |
atctaaaatacaaaaataattttttgttcaccaaaaatcgtataagactaaaacttattcaata |
4895372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 47092972 - 47093045
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaa |
212 |
Q |
|
|
|||| ||||||||||||||| ||||||| ||| || ||| ||||| | | |||||||||||||||| |||||| |
|
|
T |
47092972 |
ttatttaaaatacaaaaataattttttgttcacaaaaaatcgtataaggcaaaaaattattcaatattataaaa |
47093045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 52030335 - 52030400
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaata |
204 |
Q |
|
|
|||||||||||||||||||| ||||||||||| || ||| ||||| || |||||| |||||||| |
|
|
T |
52030335 |
ttatctaaaatacaaaaatagttttttgtccacaaaaaatcatatataacaaaaaatgattcaata |
52030400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 32614032 - 32614109
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
|||||||||||| ||||||| ||||||||||||||| ||| ||||| ||||||||||||| |||| |||||||||| |
|
|
T |
32614032 |
ttatctaaaatataaaaataactttttgtccaccaaaaatcgtataagaccaaaaattatataataccataaaagttt |
32614109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 29424661 - 29424737
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagtt |
215 |
Q |
|
|
|||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||||| ||||||||| |
|
|
T |
29424661 |
ttatctaaaatacaaaaatagttttttgtccaccaaaaaacgtacaagaccaaaaattattcaataccataaaagtt |
29424737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 27824744 - 27824821
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
||||| |||||||||||||| ||||||||||| ||| ||| |||| || |||||||||||||||| |||||||||| |
|
|
T |
27824744 |
ttatccaaaatacaaaaatagctttttgtccaacaaaaatcatataagatcaaaaattattcaataccataaaagttt |
27824821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 10552790 - 10552733
Alignment:
Q |
161 |
tttttgtccaccaacaatagtatatgaccaaaaattattcaatata--ataaaagttt |
216 |
Q |
|
|
|||||||||||||| ||| ||||| || |||||||||||||||||| |||||||||| |
|
|
T |
10552790 |
tttttgtccaccaaaaatcgtataagatcaaaaattattcaatatatcataaaagttt |
10552733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 2122727 - 2122698
Alignment:
Q |
187 |
accaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
|||||||||||||||||||||||||||||| |
|
|
T |
2122727 |
accaaaaattattcaatataataaaagttt |
2122698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 3689 - 3766
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
|||||||||||||||||||| ||||| |||||||| ||| |||| || |||||||||||||||| |||||||||| |
|
|
T |
3689 |
ttatctaaaatacaaaaatagttttttatccaccaaaaatcatataagataaaaaattattcaatatcataaaagttt |
3766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 3359910 - 3359974
Alignment:
Q |
152 |
aaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||| |||||||||| |
|
|
T |
3359910 |
aaaaatagttttttgtcgaccaaaaatagtataagacaaaaaattattcaatatcataaaagttt |
3359974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 29992751 - 29992813
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaa |
202 |
Q |
|
|
||||||||||||||||| || |||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
T |
29992751 |
ttatctaaaatacaaaataat-tttttgtccaccaaaaatcgtataagaccaaaaattattcaa |
29992813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 21408682 - 21408749
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataa |
207 |
Q |
|
|
|||||||||||||||||||| |||| |||||| || ||| ||||| || |||||||||||||||||| |
|
|
T |
21408682 |
ttatctaaaatacaaaaata-gttttcgtccactaaaaatcgtataagataaaaaattattcaatataa |
21408749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 29455908 - 29455979
Alignment:
Q |
144 |
taaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
|||||||| |||||| | ||||||||||||| ||| |||| ||||||| ||||||||||| |||||||||| |
|
|
T |
29455908 |
taaaataccaaaatagcgttttgtccaccaa-aatcatataagaccaaatattattcaataccataaaagttt |
29455979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 26180315 - 26180395
Alignment:
Q |
96 |
ttcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaat |
178 |
Q |
|
|
|||||||||||| ||| ||||||||| || || ||||||| | ||| ||||||||||||||| |||||||||||| |||||| |
|
|
T |
26180315 |
ttcactaaaccatatcacaactttttatcctacgtacaaagt--tatttaaaatacaaaaataactttttgtccacaaacaat |
26180395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 31880098 - 31880210
Alignment:
Q |
97 |
tcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatt |
196 |
Q |
|
|
|||| |||||||||| ||||| |||||| || |||||| || | ||||||||| |||||| | |||||||| |||||||| ||||| || ||||||| |
|
|
T |
31880098 |
tcaccaaaccacatcacaactatttgtcctacgtacaagttgt---ctaaaataccaaaatagcattttgtcccccaacaatcgtataatacaaaaaatt |
31880194 |
T |
|
Q |
197 |
attcaatataataaaa |
212 |
Q |
|
|
||||||| | |||||| |
|
|
T |
31880195 |
attcaatgtcataaaa |
31880210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 17031192 - 17031132
Alignment:
Q |
139 |
ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattatt |
199 |
Q |
|
|
|||| ||||||||||||||| |||||||||||| || ||| |||| |||||||||||||| |
|
|
T |
17031192 |
ttatttaaaatacaaaaatagctttttgtccacaaaaaatcatataagaccaaaaattatt |
17031132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 33610 - 33682
Alignment:
Q |
144 |
taaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt |
216 |
Q |
|
|
|||||||| |||||| ||||||||| ||| | | ||||| |||||||||||||||||||| |||||||||| |
|
|
T |
33610 |
taaaataccaaaataggcttttgtccatcaaaacttgtataagaccaaaaattattcaatatcataaaagttt |
33682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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