View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_35 (Length: 231)
Name: NF4418_high_35
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_35 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 25950983 - 25951203
Alignment:
| Q |
11 |
catcatcactgagcaacaaaaaatacaaagagttaaacaaacacaagttattagtaa-aatcaaaagaacaatccttgagaatatagagagtaagcaccg |
109 |
Q |
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| T |
25950983 |
catcatcactgagcaacaaaaaatacaaagagt-aaagaaacaaaagttattagtaagaatcaaaagaacaatccttgagaatatagagagtaagcacca |
25951081 |
T |
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| Q |
110 |
ctgatcaaaccttattattaaagtaatttcaaaaatagttttaattgaaattaagcgtgcttcaacgagcataataccaaaaatagtgatgcagcactga |
209 |
Q |
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| T |
25951082 |
ctgatcaaaacttattattcaagtaatttcaaaaatagttttaattgaaattaagcgtgcttcaacgagcataataccaaaaacagtgatgcagcactga |
25951181 |
T |
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| Q |
210 |
cacttcagattgaggggcaaca |
231 |
Q |
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|||||||||||||||||||||| |
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| T |
25951182 |
cacttcagattgaggggcaaca |
25951203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 25960228 - 25960454
Alignment:
| Q |
11 |
catcatcactgagcaacaaaaaatacaaagagttaaacaaacacaa---gttatt--agtaaaatcaaaagaacaatccttgagaatatagagagtaagc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || | | | || | |||||||||||||||||||||||||||||| ||||||| |
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| T |
25960228 |
catcatcactgagcaacaaaaaatacaaagagttaaacaaacaaaaaaagaaagtgtagcagaatcaaaagaacaatccttgagaatatagacagtaagc |
25960327 |
T |
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| Q |
106 |
accgctgatcaaaccttattattaaagtaatttcaaaaatagttttaattgaaattaagcgtgcttcaacgagcataataccaaaaatagtgatgcagca |
205 |
Q |
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| T |
25960328 |
accactgatcaaaatttattattcaagtaatttcaacaatagttttaattaaaattaagcttgcttcaacgggcataataccaaaaagagtgatgcagca |
25960427 |
T |
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| Q |
206 |
ctgacac-ttcagattgaggggcaaca |
231 |
Q |
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| T |
25960428 |
ccgacactttgagattgaggggcaaca |
25960454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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