View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_high_37 (Length: 221)
Name: NF4418_high_37
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 24600595 - 24600393
Alignment:
| Q |
1 |
tcttgtggtttgtttgatacaacaaagctgccaacatagaacaaaacatcaataacagtgatctaaataattaccatactttggaattgtaaaagtctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24600595 |
tcttgtggtttgtttgatacaacaaagctgccaacatagaacaaaacatcaataacagtgatataaataattaccatactttggaattgtaaaagtctaa |
24600496 |
T |
|
| Q |
101 |
cagcaatcggataaaacgttttccagtttgtaaaagtttcaaaaagtgtatgtaaatgagtgcctaaaaacatcaacatttttcttaaaggtgtaaccta |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24600495 |
cagcaatcggataaaacgttttccattttgtaaaagtttcaaaaagtgtatgtaaatgagtgcctaacaacatcaacatttttcttaaaggtgtaaccta |
24600396 |
T |
|
| Q |
201 |
ata |
203 |
Q |
| |
|
||| |
|
|
| T |
24600395 |
ata |
24600393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 932 times since January 2019
Visitors: 8333