View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418_high_5 (Length: 628)

Name: NF4418_high_5
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418_high_5
NF4418_high_5
[»] chr2 (3 HSPs)
chr2 (14-614)||(41931888-41932477)
chr2 (352-420)||(40186436-40186504)
chr2 (280-349)||(40186536-40186605)
[»] chr3 (9 HSPs)
chr3 (260-489)||(47865731-47865960)
chr3 (265-420)||(26719253-26719405)
chr3 (258-324)||(28963953-28964019)
chr3 (262-328)||(46567056-46567122)
chr3 (262-404)||(35756427-35756569)
chr3 (259-420)||(31218396-31218558)
chr3 (265-343)||(26740772-26740850)
chr3 (262-463)||(31805405-31805606)
chr3 (374-422)||(8005140-8005188)
[»] chr1 (4 HSPs)
chr1 (266-420)||(32979609-32979764)
chr1 (262-383)||(24814662-24814783)
chr1 (265-343)||(26266034-26266112)
chr1 (259-314)||(43048876-43048931)
[»] chr8 (3 HSPs)
chr8 (262-420)||(29526269-29526427)
chr8 (259-321)||(44340530-44340591)
chr8 (264-325)||(24736214-24736274)
[»] chr7 (1 HSPs)
chr7 (279-412)||(21833990-21834123)
[»] scaffold0045 (2 HSPs)
scaffold0045 (264-420)||(65046-65202)
scaffold0045 (264-420)||(72378-72534)
[»] chr4 (9 HSPs)
chr4 (246-435)||(29152811-29152999)
chr4 (262-422)||(13492335-13492494)
chr4 (277-420)||(4427282-4427426)
chr4 (273-419)||(17261103-17261240)
chr4 (265-364)||(18632264-18632363)
chr4 (264-366)||(39228841-39228943)
chr4 (259-297)||(53967209-53967247)
chr4 (241-297)||(52975220-52975275)
chr4 (242-355)||(18822558-18822671)


Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 614
Target Start/End: Complemental strand, 41932477 - 41931888
Alignment:
Q  14 ataatactcggtggtgtgatatcccttgtatgtccctttaaagaatttttgtttttctactttcaatttagggcccaccagtaatagtatgtatggtttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41932477 ataatactcggtggtgtgatatcccttgtatgtccctttaaagaatttttgtttttctactttcaatttagggcccaccagtaatagtatgtatagtttg 41932378  T
Q  114 gtgatggaccactttgttctctat--ttatctcttgcaaataatattgagaatttctttttatatgtttatagttctcacgctttcacgattctcacacg 211  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41932377 gtgatggaccactttgttctctatatttatctcttgcaaataatattcagaatttctttttatatgtttatagttctcacgctttcacgattctcacacg 41932278  T
Q  212 ttctctgaatgaattattttatggcgtttaatttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaac 311  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41932277 ttctctgaatagattattt-atggcgtttaatttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaac 41932179  T
Q  312 acattttattaattgaaatagatttcataatatatttacgttaacataacactatattgtataaaatgttggcaactaaaattaaatatgtagtacaaga 411  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||         |||| ||||||||||||||||||||||||||||||||||||||    
T  41932178 acattttattaattgaaatagatttcataatatatttatattaacata---------tgtacaaaatgttggcaactaaaattaaatatgtagtacaaga 41932088  T
Q  412 agatggaggtgaaacgaaggagaagacctgtcatccctctcatgtaccctcagaagaatttgagaacgcaacatgatgatgtggagaaaaaggtggaaac 511  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |||||||||||||||| ||||||||| |||    
T  41932087 agatggaggtggaacgaaggagaagacatgtcatccctctcatgtaccctcagaagaatttgaaaac---acatgatgatgtggaggaaaaggtgggaac 41931991  T
Q  512 tgaattaaacaatcacatattcaaatatatctacattacatactacgaagcgggaacacaagttcatgtggtcaatttgaccattcatactaacccaaga 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931990 tgaattaaacaatcacatattcaaatatatctacattacatactacgaagcgggaacacaagttcatgtggtcaatttgaccattcatactaacccaaga 41931891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 40186504 - 40186436
Alignment:
Q  352 ttaacataacactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
    ||||||||||||| | | ||| ||||| ||||||||||||||||||  ||||| |||||||||||||||    
T  40186504 ttaacataacactgtgtagtacaaaatattggcaactaaaattaaacttgtagcacaagaagatggagg 40186436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 40186605 - 40186536
Alignment:
Q  280 ttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatattta 349  Q
    |||||||||||||||||| ||||||| | |  ||||||||||||||||||  ||||||| |||| |||||    
T  40186605 ttaaaattgacaacaaaatttaataattaataacattttattaattgaaaatgatttcaaaatacattta 40186536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 260 - 489
Target Start/End: Complemental strand, 47865960 - 47865731
Alignment:
Q  260 atttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacata 359  Q
    ||||||||||||||| ||||||| |||||||||||||| |||  || ||| ||||||||||||||||||   |||||| ||||||||||||||| |||      
T  47865960 atttattaaaatgacgtaatttataattgacaacaaaatttatcaattcatcacattttattaattgaacatgatttcgtaatatatttacgttgacacg 47865861  T
Q  360 acactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtgaaacgaaggagaagacctgtcatccctctcatgtacc 459  Q
    |||||||    || |||| ||| |||||||||| |||||||| |||||||||||||| ||||| || ||  ||||||   |||||||||| |||||| ||    
T  47865860 acactatgcattacaaaaggttagcaactaaaactaaatatgaagtacaagaagatgaaggtggaaggagagagaaggtttgtcatccctttcatgtgcc 47865761  T
Q  460 ctcagaagaatttgagaacgcaacatgatg 489  Q
     ||| || ||||||||||| ||| ||||||    
T  47865760 ttcaaaataatttgagaacacaagatgatg 47865731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 420
Target Start/End: Original strand, 26719253 - 26719405
Alignment:
Q  265 ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacact 364  Q
    ||||||||||||||| ||||| ||||||  ||| ||||||| ||||||||||||||||||| |||  ||||| ||||||     || |||||||||||||    
T  26719253 ttaaaatgacataatataaaactgacaatgaaatttaataattcaacacattttattaattcaaaaggattttataata----cacattaacataacact 26719348  T
Q  365 atattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
    |  ||||| |||||| ||| || | |||  ||||| |||| ||||||||||||||||    
T  26719349 aatttgtacaaaatgtttgacatcaaaagctaaatttgtaatacaagaagatggagg 26719405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 28963953 - 28964019
Alignment:
Q  258 aaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaat 324  Q
    |||||||||||||||| |||||||||||| |||||||||| ||| ||| |||||||| |||||||||    
T  28963953 aaatttattaaaatgatataatttaaaatggacaacaaaatttattaattcaacacaatttattaat 28964019  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 46567122 - 46567056
Alignment:
Q  262 ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa 328  Q
    |||||||||| |||| ||||||||||||||| |||| ||||||| ||| ||||||||||||||||||    
T  46567122 ttattaaaatcacattatttaaaattgacaataaaatttaataaatcatcacattttattaattgaa 46567056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 404
Target Start/End: Original strand, 35756427 - 35756569
Alignment:
Q  262 ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa-atagatttcataatatatttacgttaacataa 360  Q
    |||||| ||||| ||| |||||||||||||| |||| ||||||| | | ||||||||| ||| |||| ||| ||||||||| | || ||| ||| || ||    
T  35756427 ttattataatgatatattttaaaattgacaataaaacttaataatttatcacattttagtaaatgaacata-atttcataacacatatacattatcacaa 35756525  T
Q  361 cactatattgtataaaatgttggcaactaaaattaaatatgtag 404  Q
    |||| | |  ||||||||||||||||||||||  ||||||||||    
T  35756526 cactgtgtactataaaatgttggcaactaaaacgaaatatgtag 35756569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 420
Target Start/End: Complemental strand, 31218558 - 31218396
Alignment:
Q  259 aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacat 358  Q
    |||||||||||| |||| |||||||||||||||| |||| ||||||| | | |  | |||||||||  ||   |||||||||| | ||||||  || | |    
T  31218558 aatttattaaaaggacaaaatttaaaattgacaaaaaaatttaataattgagcctaatttattaatcaaacatgatttcataacacatttacaataccgt 31218459  T
Q  359 aacactatattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
    ||  |||| | ||| |||||| ||||||| |||| ||||||||||||| ||||||||||||||    
T  31218458 aatgctatgtagtagaaaatgtttggcaattaaagttaaatatgtagtccaagaagatggagg 31218396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 26740772 - 26740850
Alignment:
Q  265 ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataata 343  Q
    ||||| ||||||||  |||||| |||||  ||| ||||||| |||||||||||||||||||||||  ||||| ||||||    
T  26740772 ttaaattgacataacataaaatcgacaatgaaatttaataattcaacacattttattaattgaaaaggattttataata 26740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 463
Target Start/End: Original strand, 31805405 - 31805606
Alignment:
Q  262 ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaatt-gaaatagatttcataatatatttacgttaacataa 360  Q
    |||| |||||||||||||| |||||||| || |||| ||||||| ||| |||| | |||||  | || || |||||||||||| || ||| |||||||||    
T  31805405 ttatcaaaatgacataattaaaaattga-aataaaatttaataattcatcacaatctattatctagacat-gatttcataatacatatacattaacataa 31805502  T
Q  361 cactatattgtataaaatgttgg-caactaaaattaaatatgtagtacaagaagatggaggtgaaacgaaggagaagacctgtcatccctctcatgtacc 459  Q
    | |||  | ||| ||||| || | |  |||||  ||||| || |||||||||| ||||||||| || || ||||||| | || ||||||||||||| |||    
T  31805503 cgctaattagtacaaaatatttgacgcctaaagctaaatttgaagtacaagaatatggaggtggaatgagggagaaggcttgccatccctctcatggacc 31805602  T
Q  460 ctca 463  Q
    ||||    
T  31805603 ctca 31805606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 8005140 - 8005188
Alignment:
Q  374 aaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtg 422  Q
    ||||| |||||||||||||   ||||||||| |||||||||||||||||    
T  8005140 aaaatattggcaactaaaaccgaatatgtagcacaagaagatggaggtg 8005188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 266 - 420
Target Start/End: Original strand, 32979609 - 32979764
Alignment:
Q  266 taaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacacta 365  Q
    |||||||||||||||||||||| |||||| || ||||||| ||| |||||||||||| |||||   |||||||||||| |||| | ||||||||||||||    
T  32979609 taaaatgacataatttaaaatttacaacataatttaataattcatcacattttattatttgaacatgatttcataatacatttgcattaacataacacta 32979708  T
Q  366 tattgtataaaatgt-tggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
    | | ||| ||||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  32979709 tgtagtacaaaatgtgtggcaactagaattaaatctgtagcacaagaagatggagg 32979764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 262 - 383
Target Start/End: Complemental strand, 24814783 - 24814662
Alignment:
Q  262 ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataac 361  Q
    ||||||||| || ||||||||||| ||||||||||| ||||||| | | ||||||||||| ||||||   |||| ||||||  |||||| ||||||||||    
T  24814783 ttattaaaaagatataatttaaaactgacaacaaaatttaataatttatcacattttattgattgaacatgattccataatgcatttacattaacataac 24814684  T
Q  362 actatattgtataaaatgttgg 383  Q
    ||||  | ||||||||| ||||    
T  24814683 actaagtagtataaaatattgg 24814662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 26266112 - 26266034
Alignment:
Q  265 ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataata 343  Q
    ||||||||| ||||||||||||||||| ||||| ||| ||| |||||||| ||||||| |||||  ||||||| |||||    
T  26266112 ttaaaatgatataatttaaaattgacagcaaaatttattaattcaacacaatttattagttgaacaagatttcgtaata 26266034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 43048931 - 43048876
Alignment:
Q  259 aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacaca 314  Q
    |||||||||||||||||| |||| ||||||||||||||| ||  ||| ||||||||    
T  43048931 aatttattaaaatgacatgatttgaaattgacaacaaaatttgttaattcaacaca 43048876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 262 - 420
Target Start/End: Original strand, 29526269 - 29526427
Alignment:
Q  262 ttattaaaatgacat--aatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacata 359  Q
    |||||||||||| ||  |||||||||| |||||||||| || |||| ||| |||||||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  29526269 ttattaaaatgatatctaatttaaaat-gacaacaaaattttataattcatcacattttattaattgaaat-gatgtcataatatatttacattagcata 29526366  T
Q  360 acactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
    ||||||| | ||||||||||||  ||||||||||||||| ||||| ||||  |||||||||    
T  29526367 acactatgtagtataaaatgttcacaactaaaattaaatttgtagcacaaacagatggagg 29526427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 44340591 - 44340530
Alignment:
Q  259 aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttatt 321  Q
    ||||||| ||||||||||||| |||| |||||||||||| ||||||| ||| ||| |||||||    
T  44340591 aatttatcaaaatgacataatataaa-ttgacaacaaaatttaataattcatcacgttttatt 44340530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 24736274 - 24736214
Alignment:
Q  264 attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaatt 325  Q
    |||| |||||||||| ||||| | |||||| ||| ||||||| |||||||||||||||||||    
T  24736274 attataatgacataacttaaagt-gacaaccaaatttaataattcaacacattttattaatt 24736214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 21833990 - 21834123
Alignment:
Q  279 tttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagattt-cataatatatttacgttaacataacactatattgtataaaa 377  Q
    |||||||||||||| |||| ||||||| ||| |||||||||||||||||| || |||| ||||||| ||||| |||||||||||||||| | ||| ||||    
T  21833990 tttaaaattgacaagaaaatttaataattcatcacattttattaattgaa-tatattttcataatacatttatgttaacataacactatctagtaaaaaa 21834088  T
Q  378 tgttggcaactaaaattaaatatgtagtacaagaa 412  Q
    | ||||||||||||| ||||||||||||| |||||    
T  21834089 tattggcaactaaaactaaatatgtagtaaaagaa 21834123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 65202 - 65046
Alignment:
Q  264 attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacac 363  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||  ||| | ||||||| ||||||  |||||||||      
T  65202 attaaaatgacataatttaaaattgacaacaaaatttaataattcaacacaatttattaattgaacaaga-tacataatacatttacaataacataacgg 65104  T
Q  364 tatattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
     || | ||| |||||| ||| |||||||| |||||||||||||| |||| ||||||||    
T  65103 gatttagtacaaaatgtttgtcaactaaagttaaatatgtagtataagatgatggagg 65046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 72534 - 72378
Alignment:
Q  264 attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacac 363  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||  ||| | ||||||| ||||||  |||||||||      
T  72534 attaaaatgacataatttaaaattgacaacaaaatttaataattcaacacaatttattaattgaacaaga-tacataatacatttacaataacataacgg 72436  T
Q  364 tatattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
     || | ||| |||||| ||| |||||||| |||||||||||||| |||| ||||||||    
T  72435 gatttagtacaaaatgtttgtcaactaaagttaaatatgtagtataagatgatggagg 72378  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 435
Target Start/End: Complemental strand, 29152999 - 29152811
Alignment:
Q  246 attagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatata 345  Q
    ||||||||| |||||||||||||||||||||||||||||||||  ||||||| ||||||| ||| ||||||  ||||||||||   | |||  ||||| |    
T  29152999 attagttcaacaaaatttattaaaatgacataatttaaaattgtaaacaaaatttaataattcatcacattaaattaattgaacatgtttttctaataca 29152900  T
Q  346 tttacgttaacataacactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtgaaacgaaggagaa 435  Q
    ||||| | | || |||||||| | || ||||||| |||||| | | | ||||| ||||| | || |||||||||||| || |||||||||    
T  29152899 tttacatcagcaaaacactatgtagtgtaaaatgatggcaattgacactaaatttgtagca-aaaaagatggaggtggaaggaaggagaa 29152811  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 13492494 - 13492335
Alignment:
Q  262 ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa-atagatttcataatatatttacgttaacataa 360  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| | | ||||||||||| |||||| ||| |||| |||||  |||||| ||| |||||    
T  13492494 ttattaaaatgacataatttaaaattgacaac-aaatttaataatttatcacattttattgattgaacata-attttataatgcatttacattagcataa 13492397  T
Q  361 cactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtg 422  Q
    ||| |  | ||||||| | ||||||||||||| ||||  | ||| ||| |||||||||||||    
T  13492396 caccaagtagtataaattattggcaactaaaactaaacctctagcacaggaagatggaggtg 13492335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 420
Target Start/End: Complemental strand, 4427426 - 4427282
Alignment:
Q  277 aatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa-atagatttcataatatatttacgttaacataacactatattgtataa 375  Q
    ||||||||||||||||||||| ||||||  ||| || ||||||||||  ||| ||| |||||| ||||||| ||| ||||||||| | || || ||| ||    
T  4427426 aatttaaaattgacaacaaaatttaatagttcatcagattttattaagcgaacata-atttcaaaatatatctacattaacataaaattagatagtacaa 4427328  T
Q  376 aatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg 420  Q
    |||| ||| | ||||||| ||||| ||||| |||||||| ||||||    
T  4427327 aatgtttgacgactaaaactaaatttgtagcacaagaaggtggagg 4427282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 17261240 - 17261103
Alignment:
Q  273 acataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacactatattgta 372  Q
    ||||||||||||||| | ||||||| ||||||| ||| || |||||||| ||||||        ||||||| |||||| ||||||||||||||| | |||    
T  17261240 acataatttaaaatt-ataacaaaatttaataattcagcatattttatttattgaa--------cataatacatttacattaacataacactatgtagta 17261150  T
Q  373 taaaatgttggcaactaaaattaaatatgtagtacaagaagatggag 419  Q
     |||| |||| ||||||||| || || ||||| ||||||| ||||||    
T  17261149 caaaaagttgacaactaaaactatatttgtagcacaagaatatggag 17261103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 18632363 - 18632264
Alignment:
Q  265 ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacact 364  Q
    ||||| |||||| || |||||||||||| |||| |||||||  |||||||||||||||||| ||  ||| || ||| |||||||||  |||| |||||||    
T  18632363 ttaaagtgacatgatataaaattgacaataaaatttaataatacaacacattttattaattaaagaagaatttatattatatttacaataacttaacact 18632264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 39228841 - 39228943
Alignment:
Q  264 attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatag-atttcataatatatttacgttaacataaca 362  Q
    |||||| ||||||||| ||||||| ||||||||| |||  || |||||||| ||||||||||| ||||| |||| ||||||| ||||| ||| ||||||     
T  39228841 attaaagtgacataatataaaatttacaacaaaatttataaattcaacacaatttattaattg-aatagaattttataatatgtttacattagcataact 39228939  T
Q  363 ctat 366  Q
    ||||    
T  39228940 ctat 39228943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 53967247 - 53967209
Alignment:
Q  259 aatttattaaaatgacataatttaaaattgacaacaaaa 297  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  53967247 aatttattaaaatgacataatttaaaattgtcaacaaaa 53967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 52975220 - 52975275
Alignment:
Q  241 aatttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaa 297  Q
    ||||||||| |||| || ||| ||||||||| |||||||||||||||||||||||||    
T  52975220 aatttattaattcaacataatatattaaaat-acataatttaaaattgacaacaaaa 52975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 18822558 - 18822671
Alignment:
Q  242 atttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataa 341  Q
    ||||||||||||| ||  ||||  ||||||||||||||||| |||||||||  ||| | | ||| ||||  || |||||||||||||    |||||||||    
T  18822558 atttattagttcaacatgatttgctaaaatgacataatttataattgacaatcaaattgattaattcaatgcaatttattaattgaacacaatttcataa 18822657  T
Q  342 tatatttacgttaa 355  Q
    || |||||| ||||    
T  18822658 tacatttacattaa 18822671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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