View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_high_6 (Length: 624)
Name: NF4418_high_6
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 11 - 624
Target Start/End: Complemental strand, 24601215 - 24600596
Alignment:
| Q |
11 |
tcatcaactccaagttttcatctgatatttgattatatatctcagcatgattacatttctgcacatagagaataatattgttaaacaatggttaatgcct |
110 |
Q |
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| T |
24601215 |
tcatcaactccaagttttcatctgatatttgattatatatctcagcatgattacatttctgcacatagagaataatattgttaaacaatggttaatgcct |
24601116 |
T |
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| Q |
111 |
tcacaaattattttacatgtctttggatatat------gtagtgcattttgaattccattaccttgacccatttagcataaaggttaagccgagtcaaca |
204 |
Q |
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| T |
24601115 |
tcacaaattattttacatgtctttggatatatatatatgtagtgaattttgaatttcattaccttgacccatttagcataaaggttaagccgagtcaaca |
24601016 |
T |
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| Q |
205 |
tcactctttcagcaagctcttgttgttcctgtcaagtgaatataaatattcatatggcaacaacatctaaatcatacatttacttcaaattcaaatgtat |
304 |
Q |
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| T |
24601015 |
tcactctttcagcaagctcttgttgttcctgtcaagtgaatataaatattcatatggcaacaacatctaaatcatacatttacttcaaattcaaatgtat |
24600916 |
T |
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| Q |
305 |
tattggttttcttaaacaatgtcttagaatcgagtcttatgaatggaaaaattaggcgttgaaagagctttgcactcttattcgcgtccacttgaaccgg |
404 |
Q |
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| T |
24600915 |
tattggttttcttaaacaatgtcttagaatcgagtcttatgaatggaaaaattaggcgttgaaagagctttgcactcttatacgcgtccacttgaaccgg |
24600816 |
T |
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| Q |
405 |
actcgaattcacaagatccaatgtaacttttggatactgagagtaaatcaaaatggatgcgacatgcatgtaaaactcatattaaagaaaaaacacactt |
504 |
Q |
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| T |
24600815 |
actcaaattcacaagatccaatgtaacttttggatactgagagtaaaacaaaatgaatgcgacatgcatgtaaaactcatattaaagaaaaaacacactt |
24600716 |
T |
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| Q |
505 |
gagactttgagtaaagctatattttagtaaaattctcaatttatgtgtgaaatgattaataactagggtaagaatgaaagagtgggtaccttcccaagca |
604 |
Q |
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| T |
24600715 |
gagactttgagtaaagctatattttagtaaaattctcaattcatgtgtgaaatgattaataactagggtaagaatgaaagagtgggtaccttcccaagca |
24600616 |
T |
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| Q |
605 |
atcggataaaacgttttcca |
624 |
Q |
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| T |
24600615 |
atcggataaaacgttttcca |
24600596 |
T |
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