View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418_low_12 (Length: 513)

Name: NF4418_low_12
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418_low_12
NF4418_low_12
[»] chr3 (21 HSPs)
chr3 (6-177)||(6943236-6943408)
chr3 (20-251)||(6787326-6787539)
chr3 (209-308)||(6943404-6943503)
chr3 (104-177)||(6940139-6940212)
chr3 (6-83)||(6940066-6940143)
chr3 (399-485)||(6558830-6558914)
chr3 (209-308)||(6940208-6940306)
chr3 (399-485)||(6527499-6527585)
chr3 (399-485)||(6849080-6849166)
chr3 (287-353)||(6787259-6787325)
chr3 (399-461)||(6797230-6797292)
chr3 (400-459)||(6938502-6938559)
chr3 (227-317)||(6234011-6234101)
chr3 (227-291)||(6138905-6138969)
chr3 (449-493)||(6411128-6411172)
chr3 (225-300)||(6164220-6164295)
chr3 (399-465)||(6550323-6550389)
chr3 (402-485)||(6802864-6802949)
chr3 (227-271)||(6859391-6859435)
chr3 (227-317)||(13283103-13283193)
chr3 (399-472)||(6785671-6785744)
[»] scaffold0425 (1 HSPs)
scaffold0425 (399-485)||(12185-12271)
[»] chr2 (1 HSPs)
chr2 (447-485)||(27408805-27408843)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 6943236 - 6943408
Alignment:
Q  6 gcattaaattacaaccatacaaagatccatatgaatttttaaaa-ctgtgcagcaattagccaagtctccaagagataaatgattgaaacttacctcttg 104  Q
    ||||||| || ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||    
T  6943236 gcattaagtttcaaccatacaaagatccatatcaatttttaaaaactgtgcagcaattagctaagtctccaagagattaatgattgaaacttacctcatg 6943335  T
Q  105 ataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagct 177  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6943336 ataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6943408  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 6787539 - 6787326
Alignment:
Q  20 ccatacaaagatccatatgaattttt-aaaactgtgcagcaattagccaagtctcc-aagagataaatgattgaaacttacctcttgataattacaggca 117  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||||                    
T  6787539 ccatacaaagatccatatgaattttttaaaactgtgcagccattagctaagtctcccaagag-taaatgcttgaaacttacctc---------------- 6787457  T
Q  118 ttcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagctgatttagaaaacttggcagttaagtcaagacaagctcttg 217  Q
       ||||||||| ||||||| |||||||||||||| ||||||||||||||| || |||||||||| ||||||||||  |||||| || |||| |||||||    
T  6787456 ---atgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaaacttggttgttaagacaggacatgctcttg 6787360  T
Q  218 cagttactttgttcttcagctgcaatctctcctt 251  Q
    |||||||||||||||||||||||||||| |||||    
T  6787359 cagttactttgttcttcagctgcaatctatcctt 6787326  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 6943404 - 6943503
Alignment:
Q  209 aagctcttgcagttactttgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaat 308  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  6943404 aagctcttgcagttactttgttcttgagatgcaatctctccttgacactgatgatgaaatggttgagagggtctcaccagcagaatcagcatctaccaat 6943503  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
Q  104 gataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6940139 gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6940212  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 6940066 - 6940143
Alignment:
Q  6 gcattaaattacaaccatacaaagatccatatgaatttttaaaactgtgcagcaattagccaagtctccaagagataa 83  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6940066 gcattaactttcaaccatacaaagatccatatgaatttttaaaactgtgcagcaattagctaagtctccaagagataa 6940143  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 6558914 - 6558830
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagtgtcacagtatgcagaaattaaaga 485  Q
    ||||||||||||||||| |||||||  ||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6558914 tatgtttgaatttaaaactagggaagagatgatgtgttgcaatttatattaccaaaagagagtg--acagtatgcagaaattaaaga 6558830  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 6940208 - 6940306
Alignment:
Q  209 aagctcttgcagttactttgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaat 308  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||  |||||| |||  ||||||||||||||| |||||||||||||    
T  6940208 aagctctttcagttactt-gttcttcagatgcaatctctccttgacactgatgatgagatggttgagaggatctcaccagcagaatgagcatctaccaat 6940306  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 6527585 - 6527499
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagtgtcacagtatgcagaaattaaaga 485  Q
    ||||||||||| ||||| |||||||| |||||  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  6527585 tatgtttgaatgtaaaactagggaaaagatgacatgatgcaatttatattactaaaagagcgtgtcacggtatgcagaaattaaaga 6527499  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 6849166 - 6849080
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagtgtcacagtatgcagaaattaaaga 485  Q
    ||||||||||| ||||| || ||||| |||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  6849166 tatgtttgaatgtaaaactacggaaaagatgacatgatgcaatttatattaccaaaagagggtgtcacggtatgcagaaattaaaga 6849080  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 6787325 - 6787259
Alignment:
Q  287 agcagaatcagcatctaccaatctgaagagaacacagtccacatggatcagactacttttgtagagt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||  |||||||| ||||    
T  6787325 agcagaatcagcatctaccaatctgaagagaacacagtccacatgggtaagaggacttttgtcgagt 6787259  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 461
Target Start/End: Complemental strand, 6797292 - 6797230
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagt 461  Q
    |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  6797292 tatgattgaatttaaaaatagggaaaagttgatgtgatgcaatttatattaccaaaaaagagt 6797230  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 6938502 - 6938559
Alignment:
Q  400 atgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagaga 459  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6938502 atgtttgaatctaaaaatagggaa--gatgatgtgatgcaatttatattaccaaaagaga 6938559  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 6234011 - 6234101
Alignment:
Q  227 tgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaatctgaagaga 317  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||| ||||||  |||||||||||| | |||||| || ||||||| |||||    
T  6234011 tgttcttcagctgcattctctcctcgccgctgatgatgaaatggctgggagaatctcaccagcaggaccagcatttatcaatctgcagaga 6234101  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 6138905 - 6138969
Alignment:
Q  227 tgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcag 291  Q
    ||||||||||||||| ||||||||  |||||||||||||| ||| ||||||  ||||||||||||    
T  6138905 tgttcttcagctgcattctctcctcaccactgatgatgaaatggctgggagaatctcaccagcag 6138969  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 6411172 - 6411128
Alignment:
Q  449 accaaaagagagtgtcacagtatgcagaaattaaagattcacaaa 493  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  6411172 accaaaaaagagtgtcacagtatgcagaaattaaagactcacaaa 6411128  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 6164220 - 6164295
Alignment:
Q  225 tttgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcat 300  Q
    ||||||||||||||||| |||||||| |||||||| ||||||  || ||||||  |||||||||||| | ||||||    
T  6164220 tttgttcttcagctgcattctctcctcgccactgacgatgaaacggctgggagaatctcaccagcaggaccagcat 6164295  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 6550389 - 6550323
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagtgtca 465  Q
    ||||||||||| ||||| ||||||||  || |||||||||||||| |||||||||||  ||||||||    
T  6550389 tatgtttgaatgtaaaactagggaaagaataatgtgatgcaatttgtattaccaaaaatgagtgtca 6550323  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 485
Target Start/End: Complemental strand, 6802949 - 6802864
Alignment:
Q  402 gtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagag--tgtcacagtatgcagaaattaaaga 485  Q
    ||||| || ||||| ||||||||  |||||| ||| ||| |||||||||||||| | ||  |||||||||||||||||||||||||    
T  6802949 gtttggatgtaaaattagggaaaatatgatgcgattcaaattatattaccaaaaaaaagggtgtcacagtatgcagaaattaaaga 6802864  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 6859435 - 6859391
Alignment:
Q  227 tgttcttcagctgcaatctctccttgccactgatgatgaattggt 271  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||    
T  6859435 tgttcttcagctgcattctctccttgctactgatgatgaaatggt 6859391  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 13283193 - 13283103
Alignment:
Q  227 tgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaatctgaagaga 317  Q
    ||||||||||||||| |||||| |  | ||||||||||||  || ||||||  |||||||||||| | |||||| || ||||||| |||||    
T  13283193 tgttcttcagctgcattctctcatctctactgatgatgaaacggctgggagaatctcaccagcaggaccagcatttatcaatctgcagaga 13283103  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 472
Target Start/End: Complemental strand, 6785744 - 6785671
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagtgtcacagtatg 472  Q
    ||||||||||  ||||  |||||||| |||||||||| ||||||||||  ||||||   |||||||||||||||    
T  6785744 tatgtttgaacgtaaagctagggaaaggatgatgtgaagcaatttataaaaccaaataggagtgtcacagtatg 6785671  T

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Target: scaffold0425 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 12271 - 12185
Alignment:
Q  399 tatgtttgaatttaaaaatagggaaacgatgatgtgatgcaatttatattaccaaaagagagtgtcacagtatgcagaaattaaaga 485  Q
    ||||||||||| ||||| || ||||| |||||  |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  12271 tatgtttgaatgtaaaactacggaaaagatgacatgatgcaatttatattaccaaaagagggtgtcacggtatgcagaaatttaaga 12185  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 485
Target Start/End: Original strand, 27408805 - 27408843
Alignment:
Q  447 ttaccaaaagagagtgtcacagtatgcagaaattaaaga 485  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  27408805 ttaccaaatgagagtgtcacagtatacagaaattaaaga 27408843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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