View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_13 (Length: 502)
Name: NF4418_low_13
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_13 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 50965433 - 50964961
Alignment:
| Q |
18 |
ataggttcatataacaggtgatcttgttgggaaagccgtgatcgtatcgtgtgtgactatcgactaaagatgaaccagggtgaacacagtgtgttactgg |
117 |
Q |
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| T |
50965433 |
ataggttcatataacaggtgatcttgttgggaaagccgtgatcgtatcgtgtgtgactatcgactaaagatgaaccagggtgaacacagtgtgttactgg |
50965334 |
T |
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| Q |
118 |
agttatcaacattgttatgtaatggcatgcccaacaagcagaagaagtcgtgtgatgaatagttgatgcatgtggagtacaactccaaattgttagcata |
217 |
Q |
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| T |
50965333 |
agttatcaacattgttatgtaatggcatgcccaacaagcagaagaagtagtgtgatgaatagttgatgcatgtggagtacaactccaaattgttagcata |
50965234 |
T |
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| Q |
218 |
gaaaccaacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttgttaagtgaccaaaagcatagaaaccaacatgtc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965233 |
gaaaccaacatgacatgataagtaaccaaatagctggcacagatatgattatgtaatggcatctttgttaagtgaccaaaagcatagaaaccaacatgtc |
50965134 |
T |
|
| Q |
318 |
agaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataactatcacag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50965133 |
agaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataactatcacag |
50965034 |
T |
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| Q |
418 |
aaatcaaaatggttattctgatgaggctgattccaattggttttttaacagattttggcacccagctgatgat |
490 |
Q |
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| T |
50965033 |
aaatcaaaatggttattctgatgaggttgattccaattggttttttaacagattttggcacccagttgatgat |
50964961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 299 - 490
Target Start/End: Complemental strand, 50980602 - 50980412
Alignment:
| Q |
299 |
gcatagaaaccaacatgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg |
398 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50980602 |
gcatggaaaccaacatgacagaaccacagccagagtac-tcagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatg |
50980504 |
T |
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| Q |
399 |
ctcactataactatcacagaaatcaaaatggttattctgatgaggctgattccaattggttttttaacagattttggcacccagctgatgat |
490 |
Q |
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| T |
50980503 |
ctcactatagctggcacagaaatcaagatggttattcggttgaggctgattcccattggtttttcaacagattttggcatccagttgatgat |
50980412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 50981603 - 50981562
Alignment:
| Q |
33 |
aggtgatcttgttgggaaagccgtgatcgtatcgtgtgtgac |
74 |
Q |
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| T |
50981603 |
aggtgatcttgttgggaaagaagtgatcgtatcgtgggtgac |
50981562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 312 - 490
Target Start/End: Original strand, 13641257 - 13641434
Alignment:
| Q |
312 |
catgtcagaaccacaggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataacta |
411 |
Q |
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|||| |||||||||| |||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
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| T |
13641257 |
catgacagaaccacaaccagagtac-tcagcatacagagaggccagctttggacatgccatttttgacataaagaacagaacacatgctcactacagctg |
13641355 |
T |
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| Q |
412 |
tcacagaaatcaaaatggttattctgatgaggctgattccaattggttttttaacagattttggcacccagctgatgat |
490 |
Q |
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| T |
13641356 |
gcataggaatcaagatggttactctgttgaggctgattctcattggttcttcaacagattttggcacccagttgatgat |
13641434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 13637831 - 13637889
Alignment:
| Q |
20 |
aggttcatataaca---ggtgatcttgttgggaaagccgtgatcgtatcgtgtgtgact |
75 |
Q |
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| T |
13637831 |
aggttcatataacacaaggtgatcatgtggggaaagcagtgatcgtatcgtgggtgact |
13637889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 490
Target Start/End: Original strand, 11664 - 11813
Alignment:
| Q |
341 |
gcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataactatcacagaaatcaaaatggttattctgatg |
440 |
Q |
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||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| |||||| || || ||||||||| ||||| || ||| | |
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| T |
11664 |
gcatttagagaagccagctttggacatgcaatttttgacataaagaataggacacatgcttactatagctggcatagaaatcaagatggtgatgctgtta |
11763 |
T |
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| Q |
441 |
aggctgattccaattggttttttaacagattttggcacccagctgatgat |
490 |
Q |
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|| ||||||| ||||||||| |||||||||||| |||| | ||||||| |
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| T |
11764 |
agagtgattccctttggtttttcaacagattttggaacccggttgatgat |
11813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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