View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_16 (Length: 424)
Name: NF4418_low_16
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 29040888 - 29041296
Alignment:
| Q |
1 |
ggaataaatatgctgaagcatgataaacatctgaatacttccacttctttctcaggatgatcatcaccgtcatcatcggcag------cagcagcagtaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29040888 |
ggaataaatatgctgaagcatgataaacatctgaatacttccacttctttctcaggatgatcatcaccgtcatcatcggcagcagcagcagcagcagtaa |
29040987 |
T |
|
| Q |
95 |
caggagcaggaagtggatccatactggtaatttcagatgttacttttgcataattaccttggttagcttcatgtagagtactatcaggattaaccacatt |
194 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29040988 |
caggagcaggaggtggatccatactggtaatttcagatgttactttttcataattaccttggttagcttcatgtgtagtactatcaggattaaccacatc |
29041087 |
T |
|
| Q |
195 |
attgtcaactacactgtccaacctatcgcgcttgcctttgttgtctagtatctgaatgttcctttttcttttcttgaggataacccttttagtaatgcaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29041088 |
attgtcaactacactgtccaacctatcgcgcttgcctttgttgtctagtatctgattgttcctttttcttttcttgaggataacccttttagtgatgcaa |
29041187 |
T |
|
| Q |
295 |
gatttgcaattaggacaatacaaatcatgtgtctcttgttttgcaattactaactcaacatcatactctttctcttgatggtcaatttcttctatcgagt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| |
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|
| T |
29041188 |
gatttgcaattaggacaatacaaatcatgtgtctcttgttttgcaattactaactcaacatcatactctttctcttgctggtcagtttcttttatcgagt |
29041287 |
T |
|
| Q |
395 |
taagttcct |
403 |
Q |
| |
|
||||||||| |
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|
| T |
29041288 |
taagttcct |
29041296 |
T |
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