View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_17 (Length: 401)
Name: NF4418_low_17
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 21531941 - 21532325
Alignment:
| Q |
1 |
ataaataaaaaccctttcttcttcaaattctcactctttctttcgcatcgctatttcatcattttcctcaagaattagggtttcttcctcaaatcnnnnn |
100 |
Q |
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| T |
21531941 |
ataaataaaaaccctttcttcttcaaaatctcactctttctttcgcatcgctatttcatcattctcctcaagaattagggtttcttcctcaaatcctctc |
21532040 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnnnccatttcacaatgctgagaaatctccaagaacacgattcaaattactctgattctctgtaagttcttcatcaatcaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21532041 |
actttctctcttctcttctcccatttcacaatgctgagaaatctccaagaacacgattcaaattactctgattctctgtaagttcttcatcaatcacact |
21532140 |
T |
|
| Q |
201 |
ctaatcattcagtaattctacttaatttatttaattaatcaatcaaatttcttgtgattaggtttgttcgcatcatagcatgtgaattatgctgcagtac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21532141 |
ctaatcattcagtaattctacttaatttatttaattaatcaatcgaatttcttgtgattaggtttgttcgcatcatagcatgcgaattatgctgcagtac |
21532240 |
T |
|
| Q |
301 |
ttgtaatccaaggcgcaagaaaaacatcaatgaagggataccgtttgaagatatggagtttcttgagaagcttggtgaaggtggt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21532241 |
ttgtaatccaaggcgcaagaaaaacatcaatgaagggaaaccgtttgaagatatggagtttcttgagaagcttggtgaaggtggt |
21532325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 32241719 - 32241833
Alignment:
| Q |
163 |
ttactctgattctctgtaagttcttcatcaatcaaactctaatcattcagtaattctacttaatttatttaattaatcaatcaaatttcttgtgattagg |
262 |
Q |
| |
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|||||| | |||||| ||| || ||||| ||||| || ||||||||||||||||| | ||||||| ||||||| |||| ||||||||||||||||| |
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| T |
32241719 |
ttactccggttctctctaactttttcattaatcacacactaatcattcagtaattattgttaatttgtttaatt----aatccaatttcttgtgattagg |
32241814 |
T |
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| Q |
263 |
tttgttcgcatcatagcat |
281 |
Q |
| |
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|||||| | ||||||||| |
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| T |
32241815 |
tttgtttgattcatagcat |
32241833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 32241858 - 32241899
Alignment:
| Q |
340 |
accgtttgaagatatggagtttcttgagaagcttggtgaagg |
381 |
Q |
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|||||| ||| |||||||||||||||||| |||||||||||| |
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| T |
32241858 |
accgttagaaaatatggagtttcttgagatgcttggtgaagg |
32241899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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