View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_18 (Length: 388)
Name: NF4418_low_18
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 120 - 388
Target Start/End: Original strand, 2044410 - 2044677
Alignment:
| Q |
120 |
tgacaatgaaaattttgtacatattagttgatgcagaagagttggccaataattcaatacatacatttagctaaaccaacaatcgattggtctaaatgat |
219 |
Q |
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| T |
2044410 |
tgacaatgaaaattttgtacatattagttgatgtagaagagttggccaataattcaatacatacattttgctaaaccaacaatcgattggtctaaatgat |
2044509 |
T |
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| Q |
220 |
aagtgattttagctcgtcaactaatgttcaattcaaaggtgataacttcatacttataatatgacaaaagcactcaaagaaagtgcatatcggtaatgtt |
319 |
Q |
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| T |
2044510 |
aagtgattttagctcgtcaactaatgttcaattcaatggtgataacttcatacttataatatgataaaagcactcaaagaaagtgcatatcggtaatgtt |
2044609 |
T |
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| Q |
320 |
caatatatacttagggatggacagaactgaactcaacctgttaggagtcaactatcaactaaactgaac |
388 |
Q |
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|||||| ||||||||||||||||||||||||||||| || |||||||| ||| ||||| |||||||||| |
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| T |
2044610 |
caatatgtacttagggatggacagaactgaactcaatctcttaggagttaac-atcaattaaactgaac |
2044677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 2044328 - 2044410
Alignment:
| Q |
10 |
ataatactataacggatgaatgagtcatatatacatattgcaaacaatggattgatctaagtgataagagattatttgagcct |
92 |
Q |
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| T |
2044328 |
ataatactataacggatgaatgagtcatatatatgtattgcaaacaatggattgatctaagtgataagagattatttgagcct |
2044410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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