View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_19 (Length: 374)
Name: NF4418_low_19
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 8895235 - 8895586
Alignment:
| Q |
16 |
caagtaccacttgacaaccgtcatgaaaacatagacaaaaaatttgactacacttaannnnnnnnnnnnnnggtaagcatcacatatggagccaagttcc |
115 |
Q |
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| T |
8895235 |
caagtaccacttgacaactgtcatgaaaacatagacaaaaaatttgactacacttaatttttttttttt--ggtaagcatcaaatgtggagccaagttcc |
8895332 |
T |
|
| Q |
116 |
ctgtctgctaacattaacagaaataccttctctttttagtaacagtaaaatgtgaaagctatgacagtagtgattttatttattttaacttttcacaacc |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8895333 |
ctgtctgccaacattaacagaaataccttctctttttagtaacagtaaaatgtgaaagctatgacagtagtgattttatttattttaacttttcacaacc |
8895432 |
T |
|
| Q |
216 |
aagaacaaataccaaaaatggagaaaaagggtaggatgaacccaaagagagactataccaggtgtgaatgacccaagagaataactgagcaaggctatgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8895433 |
aagaacaaataccaaaaatggagaaaaagggtaggatgaacccaaagagagactataccaggtgtgaatgacccaagagaataactgagcaaggctatgt |
8895532 |
T |
|
| Q |
316 |
ggctggaattgagcctttcacttatgcatgttctacacgtttatctctgctcct |
369 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |
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| T |
8895533 |
ggctggaattgagcctttcactgatgcatgttctacacgtttatttctggtcct |
8895586 |
T |
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