View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_2 (Length: 706)
Name: NF4418_low_2
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 332 - 697
Target Start/End: Original strand, 23116714 - 23117079
Alignment:
| Q |
332 |
aacaatagcaaacataacaacaaaaccacatctcaatgtggaagatagtttgtggctaaatatgcaacaacactaagaaacttcatattattattcaatg |
431 |
Q |
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| T |
23116714 |
aacaatagcaaacataacaacaaaaccacatctcaatgtggaagatagtttgtggctaaatatgcaacaacactaagaaacttcatattattattcaatg |
23116813 |
T |
|
| Q |
432 |
tagaaagagtagacttaactaacttttctttagccaaggcatcttcacatgcttgaggtccatcaccagcaattttagcatcatagtttgcagatattgg |
531 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116814 |
tagaaagagtagacttaactatcttttctttagccaaggcatcttcacatgcttgaggtccatcaccagcaattttagcatcatagtttgcagatattgg |
23116913 |
T |
|
| Q |
532 |
atcttcatttaactcaattaacgagcttctaaatgatgcaaccaatccattgtaatcattggttgcacattgtttgatggcttgtgaagaaggttgttct |
631 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23116914 |
atcttcatttaactcaactaacgagcttctaaatgatgcaaccaatccattgtaatcattggttgcacattgtttgatggcttttgaagaaggttgttct |
23117013 |
T |
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| Q |
632 |
ttcatcaatgttttgaggtaattttggccttttgttgccttctctattgccatctctaagaataat |
697 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23117014 |
ttcatcaatgttttgaggtaattttggccttttattgccttctctattgccatctctaagaataat |
23117079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 23116376 - 23116589
Alignment:
| Q |
17 |
gattgtgttgaatctaacaagtggttataagcataattttaatttctctttagttaagaaagagcacttgaattcgctttttcttatctttgttgagttt |
116 |
Q |
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| T |
23116376 |
gattgtgttgaatctaacaagtggttataagcataattttaatttctctttagttaagaaagagcacttgaattcgctttttcttatctttgttgagttt |
23116475 |
T |
|
| Q |
117 |
tgcaatgattttacggtgtcaattgcgccaaaattatttcataaaatatggttctgaatcttcaaaaatacgtttttgcttgacaggacggctgtaatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116476 |
agcaatgattttacggtgtcaattgcgccaaaattatttcataaaatatggttctgaatcttcaaaaatacgtttttgcttgacaggacggctgtaatca |
23116575 |
T |
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| Q |
217 |
gtctcagtgagtgg |
230 |
Q |
| |
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| T |
23116576 |
gtgtcagtgagtgg |
23116589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 23116642 - 23116672
Alignment:
| Q |
282 |
ttcattttatgcattttgataaatacataga |
312 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23116642 |
ttcattttatgcattttgataaatacataga |
23116672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 13586112 - 13586172
Alignment:
| Q |
461 |
ttagccaaggcatcttcacatgcttgaggtccatcaccagcaattttagcatcatagtttg |
521 |
Q |
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|||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||| |
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| T |
13586112 |
ttagccaaggcagtgtcacatgttgtaggtccatcaccagcagttttagcatcatagtttg |
13586172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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