View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_20 (Length: 362)
Name: NF4418_low_20
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 8196442 - 8196610
Alignment:
| Q |
16 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
115 |
Q |
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| T |
8196442 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
8196541 |
T |
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| Q |
116 |
tttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
184 |
Q |
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| T |
8196542 |
tttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8196610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 8201202 - 8201370
Alignment:
| Q |
16 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
115 |
Q |
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| T |
8201202 |
catctatattgagactgccctgtccatgtctttccaagtttgactctgttatttgtttgtcctgtacgcatgctacattggatggtaattaatatatcag |
8201301 |
T |
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| Q |
116 |
tttgtcaatgccagcatgataattctttactttagcagacaaatttgaattcatgttattcttgtgagg |
184 |
Q |
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| T |
8201302 |
tttgtcaatgccagcatgataattctttactttagctgacaaatttgaattcatgttattcttgtgagg |
8201370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 8196682 - 8196847
Alignment:
| Q |
185 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
284 |
Q |
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| T |
8196682 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8196781 |
T |
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| Q |
285 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctgggtgatg |
350 |
Q |
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| T |
8196782 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctgggtgatg |
8196847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 8201442 - 8201607
Alignment:
| Q |
185 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8201442 |
cagcttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaactatttgtttctgt |
8201541 |
T |
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| Q |
285 |
tgcttctggttcatgaccatctgcggccaaccttattctgttgaataacctttatgctgggtgatg |
350 |
Q |
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| T |
8201542 |
tgcttctgattcatgaccatctgctgccaaccttattctgttgaataacctttatgctgggtgatg |
8201607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 4918121 - 4918040
Alignment:
| Q |
189 |
ttcctttatgcaaagttggaaattttctaatttcaacttttgctccatgctttaattcatatgtttttcatcaatctattaa |
270 |
Q |
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|||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
4918121 |
ttccttaatgcaaagttgcaaactttctaatatcaacttttgctccatgctttaattcatatgtttttcatcgacctattaa |
4918040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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